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AIPOCH, Medical Research Skills

“Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.” (the repository's description)

MIT version 686e09d of 17 September 2026 read 14 October 2026 600 skills listed on e2er
Open github.com/aipoch/medical-research-skills AIPOCH's site (aipoch.com) The skills in Skills

The collection

AIPOCH keeps this collection of skills for AI assistants that read SKILL.md files (Claude Code, Codex, OpenClaw) on GitHub and shares it under MIT. In its own words (README, “Medical Research Agent Skills”):

A curated library of 550+ medical research agent skills created by AIPOCH, designed to work with Claude Code, Codex, and other `SKILL.md`-compatible agent platforms. It supports the research workflow across four core areas: Evidence Insights, Protocol Design, Data Analysis, and Academic Writing. Built exclusively for medical and biomedical researchers.

AIPOCH Open-Science, AIPOCH's open-source AI research workbench, includes a selection of the skills from this library for use within its research workspace.

Every skill in this library is reviewed and evaluated through MedSkillAudit — A Domain-Specific Audit Framework for Medical Research Agent Skills — before going live. Equip your AI agent with AIPOCH medical research skills, and turn it into a capable medical research assistant.

How e2er lists it

e2er read the collection at version 686e09d and lists each of its skills on a page of its own in Skills, with the name and description quoted from the skill's SKILL.md. e2er added the field (Health and medicine) and shows the grade of the MedSkillAudit report in each skill's folder as AIPOCH's own audit.

Of 605 skill folders, 5 are left out: 4 whose SKILL.md front matter is not valid YAML, 1 whose SKILL.md has no description, since e2er quotes the description as it stands and does not repair it. None is graded Reject by AIPOCH's audit or marked deprecated.

Each skill carries this line:

Found on: AIPOCH, Medical Research Skills, github.com/aipoch/medical-research-skills (MIT), version 686e09d of 17 September 2026, read 14 October 2026

AIPOCH's own audit

MedSkillAudit is AIPOCH's framework for auditing its medical research skills (skill-auditor); a skill's folder keeps its report. The grades are AIPOCH's assessment of its own skills. e2er has not evaluated them.

AIPOCH's own audit: Production Ready585
AIPOCH's own audit: Limited Release13
No report in the folder2

Can e2er use them?

Not by default: no e2er specialist reads them, and e2er skills install does not fetch them. A specialist can read one skill's instructions once its SKILL.md is saved as ~/.e2er/skills/aipoch/<skill>.md and a template names it under [skills]; e2er then reads that one file as text, and the other files of the skill's folder (scripts, references) stay unread. Each skill's page gives the exact name.

Skills by category

At the top of the repository (1) · Health and medicine
skill-auditor “A comprehensive auditor for any agent skill — including Manus, OpenClaw/ClawHub, Claude, LobeHub, or custom SKILL.md-based skills. Use this skill whenever a user wants to evaluate…” no audit report
Academic Writing (122) · Health and medicine
abstract-summarizer “Transform lengthy academic papers into concise, structured 250-word abstracts.” AIPOCH's own audit: Production Ready abstract-trimmer “Precision editing tool that reduces abstract word count through intelligent compression techniques, maintaining scientific rigor while meeting strict journal and conference requir…” AIPOCH's own audit: Production Ready academic-abstract-refiner “Refines long medical academic texts into SCI-style unstructured Chinese and English abstracts; use when you need to condense drafts/reports/summaries into bilingual abstracts and …” AIPOCH's own audit: Production Ready academic-highlight-generator “Generates submission-ready Elsevier/SCI Highlights from manuscript text or extracted PDF/DOCX/TXT content. Use when a user needs 3-5 concise, evidence-grounded highlight bullets f…” AIPOCH's own audit: Production Ready adverse-event-narrative “Generates CIOMS I-compliant ICSR narratives from adverse event case data for FDA and EMA regulatory submission. Includes temporal analysis, MedDRA coding, causality assessment usi…” AIPOCH's own audit: Production Ready anatomy-quiz-master “Generate interactive anatomy quizzes for medical education with multiple.” AIPOCH's own audit: Production Ready anki-card-creator “Use anki-card-creator for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries for study-card generation.” AIPOCH's own audit: Production Ready arxiv-preflight “Run a submission-readiness preflight on a manuscript before arXiv upload. Use when the user is preparing an arXiv submission, asks to check a paper before uploading, mentions hall…” AIPOCH's own audit: Production Ready author-response-builder “Turns reviewer comments into structured, professional point-by-point responses linked to manuscript revisions, clarifications, rebuttals, and additional analyses.” AIPOCH's own audit: Limited Release authorship-credit-gen “Use when determining author order on research manuscripts, assigning CRediT contributor roles for transparency, documenting individual contributions to collaborative projects, or …” AIPOCH's own audit: Production Ready automated-soap-note-generator “Generate structured SOAP notes from clinical narratives, transcripts, or existing notes; use when the user needs de-identified clinical documentation organized into Subjective, Ob…” AIPOCH's own audit: Production Ready biomed-outline-generator “Generates structured biomedical outlines for review articles, discussion sections, and thesis proposals. Use when a user provides biomedical keywords, results/discussion text, or …” AIPOCH's own audit: Production Ready biotech-pitch-deck-narrative “Use biotech-pitch-deck-narrative for academic writing workflows that need structured investor-facing storytelling, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready blind-review-sanitizer “Use blind-review-sanitizer for academic writing workflows that need structured anonymization, explicit assumptions, and clear output boundaries for double-blind submission.” AIPOCH's own audit: Production Ready citation-formatter “Use when formatting references for journal submission, converting between citation styles (APA, MLA, Vancouver, Chicago), generating bibliographies for manuscripts, or ensuring co…” AIPOCH's own audit: Production Ready claim-strength-calibrator “Calibrates manuscript claim strength so wording matches the actual evidence level, study design, and validation status.” AIPOCH's own audit: Production Ready clinical-decision-support “Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with out…” AIPOCH's own audit: Production Ready conference-abstract-adaptor “Adapt scientific abstracts to conference-specific word limits, section rules, and formatting constraints; use when reshaping an existing abstract for submission.” AIPOCH's own audit: Production Ready conference-abstract-writer “Condenses a full study into conference-submission abstract format. Use when adapting a manuscript abstract or study summary to meet a specific conference's word limit, structured …” AIPOCH's own audit: Limited Release conference-poster-pitch “Use conference poster pitch for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready consistency-checker-across-manuscript “Checks consistency across title, abstract, methods, results, figures, tables, and supplements to identify internal contradictions and version drift in biomedical manuscripts.” AIPOCH's own audit: Production Ready cover-letter-drafter “Drafts journal-ready cover letters for manuscript submission. Use when preparing a submission package, communicating the manuscript's contributions and journal fit to editors, or …” AIPOCH's own audit: Production Ready cover-letter-drafter “Generates professional cover letters for journal submissions and job.” AIPOCH's own audit: Production Ready cover-letter-generator “Generates a journal-ready cover letter from manuscript metadata, highlights, and journal-fit notes. Use when preparing an academic submission package and you need editor-facing la…” AIPOCH's own audit: Production Ready dei-statement-drafter “Draft Diversity, Equity, and Inclusion statements for academic applications.” AIPOCH's own audit: Production Ready digital-twin-discharge-drafter “Use when drafting patient discharge summaries, creating personalized discharge instructions, simulating post-discharge outcomes, reducing hospital readmissions, or optimizing care…” AIPOCH's own audit: Production Ready discharge-summary-writer “Generate hospital discharge summaries from admission data, hospital course, diagnoses, procedures, and follow-up plans; use when a structured discharge document is required from c…” AIPOCH's own audit: Production Ready discussion-composer “Composes a Discussion around key findings, mechanisms, clinical relevance, and limitations. Use when writing or improving a Discussion section for any biomedical manuscript — incl…” AIPOCH's own audit: Limited Release discussion-section-architect “Structures and writes discussion sections for academic papers and research reports. Use when writing a discussion section, interpreting research results, connecting findings to ex…” AIPOCH's own audit: Production Ready ectd-xml-compiler “Automatically convert uploaded drug application documents (Word/PDF) into XML skeleton structure compliant with eCTD 4.0/3.2.2 specifications.” AIPOCH's own audit: Production Ready ehr-semantic-compressor “1. Confirm the user objective, required inputs, and non-negotiable constraints before doing detailed work. 2. Validate that the request matches the documented scope and stop early…” AIPOCH's own audit: Production Ready faq-generator “Generates FAQ lists from complex medical policies or protocols. Trigger when user provides medical documents, policies, or protocols and requests FAQ generation, patient education…” AIPOCH's own audit: Production Ready figure-legend-gen “Generate standardized figure legends for scientific figures and charts; use when preparing publication-ready legends that summarize design, variables, sample size, and key statist…” AIPOCH's own audit: Production Ready figure-legend-writer “Writes complete, publication-grade figure legends that can stand on their own. Use when writing or revising figure legends for any scientific figure — bar charts, line graphs, sca…” AIPOCH's own audit: Production Ready figure-reference-checker “Use figure reference checker for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready find-paper-references “Automatically find references for academic paper Markdown files. Reads full paper text, identifies each knowledge point requiring citation (epidemiological data, mechanism descrip…” AIPOCH's own audit: Production Ready grant-budget-justification “Use grant budget justification for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready grant-mock-reviewer “Simulate structured grant peer review for biomedical proposals; use when stress-testing significance, innovation, approach, feasibility, and reviewer-facing weaknesses before subm…” AIPOCH's own audit: Production Ready grant-proposal-assistant “Assist with biomedical grant proposal drafting, structure, and revision; use when preparing fundable proposal sections, aligning aims and methods, or improving reviewer-facing cla…” AIPOCH's own audit: Production Ready grant-specific-aims-writer “Writes Specific Aims pages for grant applications. Use when drafting or revising the Specific Aims page (NIH R01/R21/R03), NSF Project Summary, or equivalent for any major funding…” AIPOCH's own audit: Production Ready graph-interpretation “Use when interpreting scientific graphs and charts, explaining data visualizations for research presentations, writing figure captions for publications, or analyzing trends in cli…” AIPOCH's own audit: Production Ready graphical-abstract-generator “Converts a biomedical study storyline into a graphical abstract and, when direct image capability is available, generates the graphical abstract directly; otherwise it falls back …” AIPOCH's own audit: Production Ready hipaa-compliance-auditor “Clinical-grade PII/PHI detection and de-identification for healthcare text data. Scans all 18 HIPAA identifier categories with confidence scoring, generates audit logs, supports c…” AIPOCH's own audit: Production Ready iacuc-protocol-drafter “Draft IACUC protocol applications with focus on the 3Rs principles justification.” AIPOCH's own audit: Production Ready introduction-logic-builder “Builds background-gap-objective logic for biomedical manuscript introductions with clear study positioning and disciplined narrative structure.” AIPOCH's own audit: Production Ready introduction-section-writer “Writes the full Introduction section of a biomedical manuscript based on an approved or sufficiently clear study logic, while preserving evidence boundaries and introduction disci…” AIPOCH's own audit: Production Ready irb-application-assistant “Assists researchers with Institutional Review Board (IRB) application tasks, including drafting informed consent documents, reviewing research protocols for compliance, generating…” AIPOCH's own audit: Production Ready journal-club-presenter “Generate journal club slides with background, critique, and discussion.” AIPOCH's own audit: Production Ready journal-cover-prompter “Use when creating journal cover images, generating scientific artwork prompts, or designing graphical abstracts. Creates detailed prompts for AI image generators to produce public…” AIPOCH's own audit: Production Ready labarchive-integration “Converts LabArchives notebook data, entry metadata, and authorized ELN exports into manuscript-ready academic writing outputs such as Methods sections, data-availability statement…” AIPOCH's own audit: Production Ready latex-manuscript-format-converter “Converts existing manuscript content into LaTeX format aligned with a target journal, conference, or template while preserving manuscript meaning and structural integrity.” AIPOCH's own audit: Production Ready latex-posters “Creates academic-poster writing packages for LaTeX using beamerposter, tikzposter, or baposter. Use when a user needs poster-ready section copy, figure plans, captions, and packag…” AIPOCH's own audit: Production Ready lay-press-release-writer “Transform academic papers into university press releases for general.” AIPOCH's own audit: Production Ready lay-summary-for-cross-disciplinary-teams “Rewrites technical research content into a structured lay summary that cross-disciplinary teams can quickly understand and act on. Use when the user wants to explain research to c…” AIPOCH's own audit: Production Ready lay-summary-gen “Converts complex medical abstracts into plain language summaries for.” AIPOCH's own audit: Production Ready limitation-and-risk-writer “Acknowledges limitations in sample, design, measurement, and validation in a professional way that improves credibility without undermining the whole paper. Use when writing the l…” AIPOCH's own audit: Production Ready linkedin-optimizer “Use when optimizing LinkedIn profiles for doctors, physicians, nurses, healthcare professionals, or medical researchers. Crafts compelling headlines, writes professional summaries…” AIPOCH's own audit: Production Ready literature-review “Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). Creates professionally formatted markdown …” AIPOCH's own audit: Production Ready market-access-value “Use market access value for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready medical-cv-resume-builder “Use medical cv resume builder for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready medical-device-mdr-auditor “Audit medical device technical files against EU MDR 2017/745 regulations.” AIPOCH's own audit: Production Ready medical-email-polisher “Transforms rough email drafts into polished, professional medical correspondence.” AIPOCH's own audit: Production Ready medical-english-precision-editor “Improves medical English precision without changing the underlying facts, evidence boundaries, or intended scientific meaning.” AIPOCH's own audit: Production Ready medical-imaging-review “Write comprehensive literature reviews for medical imaging AI research. Use when writing survey papers, systematic reviews, or literature analyses on topics like segmentation, det…” AIPOCH's own audit: Production Ready medical-review-writer-architect “A multi-stage workflow for writing long-form medical reviews; used when the user needs to build an outline based on PubMed literature, write chapter by chapter, perform supplement…” AIPOCH's own audit: Production Ready medical-scribe-dictation “Convert physician verbal dictation into structured SOAP notes. Trigger.” AIPOCH's own audit: Production Ready medical-translation “Use medical translation for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready medication-adherence-message-gen “Use medication adherence message gen for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready meeting-minutes “Use meeting minutes for other workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready meta-analysis-methods-generator “Generates the Methods section for a meta-analysis paper, including search strategy, screening, quality assessment, data extraction, and statistical analysis.” AIPOCH's own audit: Production Ready meta-baseline-generator “Generates a meta-analysis baseline characteristics section (text + table) from raw data. Supports Chinese and English. Use when the user provides baseline data and wants a formatt…” AIPOCH's own audit: Production Ready meta-manuscript-generator “Generates a first draft of a clinical meta-analysis paper. Input the research report (including Methods and Results sections), language, and title to automatically generate a comp…” AIPOCH's own audit: Production Ready meta-results-forest-plot-analyzer “Analyzes forest plots for meta-analysis, generating detailed descriptions and formatting figure legends in Chinese or English. Use when the user wants to interpret a forest plot i…” AIPOCH's own audit: Production Ready meta-results-funnel-plot-generator “Generates a Meta-analysis results section description for funnel plots, including statistical tables (Egger's, Begg's, Trim & Fill) and figure legends. Supports English and Chines…” AIPOCH's own audit: Production Ready meta-results-risk-of-bias “Generates the "Risk of Bias" results section for a meta-analysis based on assessment tables and statistics. Use when the user wants to draft the risk of bias analysis text from pr…” AIPOCH's own audit: Production Ready meta-results-sensitivity-analysis “Generates the "Results" section for meta-analysis sensitivity analysis based on statistical tables and titles. Use when the user wants to describe sensitivity analysis results or …” AIPOCH's own audit: Production Ready method-writing “Write and revise the Methods section of research papers to ensure reproducibility; use when preparing an IMRAD manuscript or responding to journal/reporting-guideline requirements…” AIPOCH's own audit: Production Ready methods-section-writer “Turns your protocol and analysis workflow into publication-ready Methods text. Use when writing or revising the Methods section of a biomedical manuscript, ensuring it complies wi…” AIPOCH's own audit: Production Ready microbiome-diversity-reporter “Interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results.” AIPOCH's own audit: Production Ready moa-explainer “Generate 3D animation scripts and lay explanations for drug mechanisms.” AIPOCH's own audit: Production Ready molecular-review-workflow “Generates academic reviews for molecules in diseases using PubMed research. Invoke when user needs biomedical literature review with Vancouver citation format.” AIPOCH's own audit: Production Ready networking-email-drafter “Draft professional follow-up emails to contacts made at conferences - not too pushy, but memorable.” AIPOCH's own audit: Production Ready nih-biosketch-builder “Generate NIH Biosketch documents compliant with the 2022 OMB-approved.” AIPOCH's own audit: Production Ready nsfc-grant-writer “Generate a complete NSFC (National Natural Science Foundation of China) General Program grant application in Chinese, following the 2026 official template. Use when the user provi…” AIPOCH's own audit: Production Ready paper-web “Use this skill when converting academic papers to promotional and presentation formats, including interactive websites (Paper2Web), presentation videos (Paper2Video), and conferen…” AIPOCH's own audit: Production Ready paper-sprint-review “Scrum-inspired paper review, revision, and R&R workflow. Handles docx/tex/md/PDF in English or Chinese. Auto-detects manuscript stage, estimates sprint count, runs multi-lens revi…” AIPOCH's own audit: Production Ready patent-assistant “Assists R&D teams with patent technical disclosure drafting and patent/novelty search analysis; use when users ask to write a patent disclosure, structure an invention description…” AIPOCH's own audit: Production Ready patient-recruitment-ad-gen “Generate ethical, compliant, and patient-friendly recruitment advertisements for clinical trials.” AIPOCH's own audit: Production Ready peer-review “Conduct professional peer reviews for papers or theses, providing structured evaluations and improvement suggestions; use when you need a pre-submission assessment, an internal re…” AIPOCH's own audit: Production Ready peer-review-response-drafter “Assist in drafting professional peer review response letters. Trigger.” AIPOCH's own audit: Production Ready personal-statement “Use when writing medical school personal statements, residency application essays, fellowship statements, or graduate school admissions essays. Crafts compelling narratives highli…” AIPOCH's own audit: Production Ready poster-layout-planner “Use poster layout planner for other workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready poster-storyline-builder “Reorganizes a paper into a storyline suitable for scientific posters. Use when planning the section structure, title hierarchy, figure selection, and live-explanation flow for an …” AIPOCH's own audit: Production Ready presentation-hook “Creates engaging opening statements and powerful closings for medical.” AIPOCH's own audit: Production Ready prior-auth-letter-drafter “Generate professional prior authorization request letters for insurance companies with proper clinical justification and formatting.” AIPOCH's own audit: Production Ready q-and-a-prep-partner “Predict challenging questions for presentations and prepare structured responses.” AIPOCH's own audit: Production Ready radiology-image-quiz “Use when creating radiology educational quizzes, preparing board exam questions, or studying medical imaging cases. Generates interactive quizzes with X-ray, CT, MRI, and ultrasou…” AIPOCH's own audit: Production Ready rebuttal-letter-strategist “Use rebuttal letter strategist for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready recommendation-letter-assistant “Helps faculty and mentors draft standardized recommendation letters for.” AIPOCH's own audit: Production Ready reference-integrity-checker “Checks whether manuscript references are accurately matched to claims, appropriately scoped, and not overextended, misquoted, or second-hand cited.” AIPOCH's own audit: Production Ready reference-style-sync “One-click synchronization and standardization of reference formats in literature management tools, intelligently fixing metadata errors.” AIPOCH's own audit: Production Ready referral-letter-generator “Generate medical referral letters with patient summary, reason for referral, key findings, and requested next steps; use when transferring care or communicating with another clini…” AIPOCH's own audit: Production Ready regulatory-submission “Prepare FDA/EMA regulatory submissions (IND/NDA/BLA/510(k)/PMA/MAA) in CTD format. Generate module outlines (Modules 1-5), run ICH compliance checks (ALCOA+, E6 GCP, Q1-Q12), veri…” AIPOCH's own audit: Production Ready reporting-guideline-compliance-checker “Checks biomedical manuscripts against reporting guidelines such as CONSORT, STROBE, PRISMA, and TRIPOD to identify missing or weak reporting elements before submission or revision.” AIPOCH's own audit: Production Ready residency-interview-prep “Mock interview preparation tool for residency Match interviews. Generates.” AIPOCH's own audit: Production Ready response-letter “Helps organize reviewer comments and generate a standardized Word (.docx) response letter that maps each change to its exact location (page/paragraph/line). Use when revising a ma…” AIPOCH's own audit: Production Ready response-tone-polisher “Polish reviewer-response letters by softening defensive language, preserving factual meaning, and keeping responses professional, concise, and publication-appropriate.” AIPOCH's own audit: Production Ready results-section-structurer “Organizes biomedical figures, analyses, and result blocks into a clear Results section structure with disciplined narrative ordering and evidence-aware presentation.” AIPOCH's own audit: Production Ready results-section-writer “Writes the full Results section of a biomedical manuscript from a sufficiently clear result structure, figure inventory, or analysis summary while preserving evidence boundaries a…” AIPOCH's own audit: Production Ready revision-strategy-planner “Builds prioritized manuscript revision plans for major or minor revisions by separating comments that require experiments, analyses, clarification, restructuring, or wording chang…” AIPOCH's own audit: Production Ready sample-size-power-calculator “Advanced sample size and power calculations for complex study designs including survival analysis, clustered designs, and multiple comparisons.” AIPOCH's own audit: Production Ready semantic-consistency-auditor “Use semantic consistency auditor for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready slide-deck-for-lab-meeting “Structures research progress into focused and actionable slides for lab meetings or project reviews without inventing missing content.” AIPOCH's own audit: Production Ready study-limitations-drafter “Use study limitations drafter for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready style-journal-rewrite “Rewrite drafts according to target writing style or target journal format. Triggers when user says "rewrite in XX style", "match this tone", "format for XX journal", "rewrite foll…” AIPOCH's own audit: Production Ready systematic-review “Orchestrates a systematic review and meta-analysis workflow following PRISMA 2020 guidelines, from protocol development through multi-database search, screening, data extraction, …” AIPOCH's own audit: Production Ready table-narrative-writer “Converts biomedical table content into clear manuscript or presentation narrative by prioritizing meaningful patterns, contrasts, and interpretation boundaries rather than restati…” AIPOCH's own audit: Production Ready target-journal-matcher “Matches your study to appropriate journals based on topic, design, and evidence strength. Use when deciding where to submit a manuscript, comparing journal options by impact facto…” AIPOCH's own audit: Production Ready title-and-abstract-optimizer “Optimizes manuscript titles and abstracts for information density, factual accuracy, and submission fit in biomedical research writing.” AIPOCH's own audit: Production Ready tone-adjuster “Use when converting medical text between academic and patient-friendly tones, translating medical jargon for patients, adapting research papers for public audiences, or rewriting …” AIPOCH's own audit: Production Ready usmle-case-generator “Generate USMLE Step 1/2 style clinical cases with patient history, physical.” AIPOCH's own audit: Production Ready visual-content-desc “Generates detailed text descriptions of medical images and charts for.” AIPOCH's own audit: Production Ready
Data Analysis (151) · Health and medicine
d-molecule-ray-tracer “Generate photorealistic rendering scripts for PyMOL and UCSF ChimeraX.” AIPOCH's own audit: Production Ready adme-property-predictor “Analyze data with `adme-property-predictor` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” AIPOCH's own audit: Production Ready anndata “Data structure for annotated matrices in single-cell analysis; use when reading/writing .h5ad (or zarr) and exchanging data with the scverse ecosystem.” AIPOCH's own audit: Production Ready baseline-extraction-for-clinical-trials “Extracts clinical trial baseline data (study, region, participants, etc.) from article text or PMID. Checks PubMed for metadata; always falls back to LLM extraction for full detai…” AIPOCH's own audit: Production Ready batch-effect-correction “Use when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after Q…” AIPOCH's own audit: Production Ready bio-causal-genomics-mediation-analysis “Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package. Tests whether gene expression, methylation, or other molecular …” AIPOCH's own audit: Production Ready bio-causal-genomics-pleiotropy-detection “Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directional pleiotropy, and Steiger f…” AIPOCH's own audit: Production Ready biopython “A comprehensive toolbox for computational molecular biology; use it when you need programmatic sequence/structure parsing, batch bioinformatics pipelines, or automated NCBI/BLAST …” AIPOCH's own audit: Production Ready biopython-advanced “Advanced Biopython modules for motifs, population genetics, sequence utilities, restriction analysis, clustering, and GenomeDiagram visualization; use when you need extended bioin…” AIPOCH's own audit: Production Ready biopython-alignment “Sequence alignment and alignment file processing with Biopython (Bio.Align/Bio.AlignIO), triggered when you need global/local pairwise alignment, MSA read/write/format conversion,…” AIPOCH's own audit: Production Ready biopython-phylo “Use Bio.Phylo to read/write phylogenetic trees and perform visualization and statistics; use when tree parsing/conversion, pruning/rerooting, distance calculation, or plotting is …” AIPOCH's own audit: Production Ready biopython-sequence-io “Use Biopython to read/write/convert biological sequence files (FASTA/GenBank/FASTQ, etc.) and perform basic sequence operations; use when you need reliable sequence I/O, lightweig…” AIPOCH's own audit: Production Ready biopython-structure “Use Bio.PDB to parse and analyze protein structures (PDB/mmCIF) for structural bioinformatics tasks; use when you need structure parsing, geometry calculations, or structural comp…” AIPOCH's own audit: Production Ready bioservices “Unified Python access to 40+ bioinformatics web services; use when you need to query multiple databases (e.g., UniProt/KEGG/ChEMBL/Reactome) with one consistent API in a single wo…” AIPOCH's own audit: Production Ready case-control-study-quality-assessment-nos “Clinical Research Bias Assessment - Case-Control Study (NOS) v2.3.0. Use when you need to assess the bias of a case-control study using the Newcastle-Ottawa Scale (NOS) criteria, …” AIPOCH's own audit: Production Ready cerna-analysis “Use when building a ceRNA regulatory network from a key gene list by combining bundled miRNA-mRNA and miRNA-lncRNA database files, with flat-file CSV exports and PDF visualization…” AIPOCH's own audit: Production Ready cibersort-immune-infiltration-analysis “Use when estimating relative immune cell infiltration from a bulk expression matrix with a CIBERSORT-style nu-SVR deconvolution workflow based on an LM22 signature matrix, compari…” AIPOCH's own audit: Production Ready circos-plot-generator “Generate Circos configuration files for circular genomics data visualization. Supports genomic variations (SNPs, CNVs, structural variants), cell-cell communication networks, and …” AIPOCH's own audit: Production Ready clinical-data-cleaner “Use when cleaning clinical trial data, preparing data for FDA/EMA submission, standardizing SDTM datasets, handling missing values in clinical studies, detecting outliers in lab r…” AIPOCH's own audit: Production Ready cnv-caller-plotter “Detect copy number variations from whole genome sequencing data and generate publication-quality genome-wide CNV plots. Supports CNV calling, segmentation, and visualization for c…” AIPOCH's own audit: Production Ready cobrapy “Constraint-based reconstruction and analysis (COBRA) for metabolic models; use when you need to simulate growth/production, analyze flux ranges, or run knockout and medium studies…” AIPOCH's own audit: Production Ready code-refactor-for-reproducibility “Use when refactoring research code for publication, adding documentation to existing analysis scripts, creating reproducible computational workflows, or preparing code for sharing…” AIPOCH's own audit: Production Ready cohort-study-quality-assessment-nos “Evaluates the quality of cohort studies using the Newcastle-Ottawa Scale (NOS). Use when the user provides a cohort study article or text and needs a quality assessment report.” AIPOCH's own audit: Production Ready consensus-clustering-analysis “Use when identifying stable sample subtypes from bulk expression matrices with ConsensusClusterPlus, including PAC-based model selection and consensus matrix/CDF visualization. NO…” AIPOCH's own audit: Production Ready crispr-screen-analyzer “Process CRISPR screening data to identify essential genes and hit candidates. Performs quality control, statistical analysis (RRA), and hit calling for pooled CRISPR screens inclu…” AIPOCH's own audit: Production Ready data-stats-analysis “Perform statistical tests, hypothesis testing, correlation analysis, and multiple testing corrections using scipy and statsmodels. Works with ANY LLM provider (GPT, Gemini, Claude…” AIPOCH's own audit: Production Ready data-transform “Transform, clean, reshape, and preprocess data using pandas and numpy. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).” AIPOCH's own audit: Production Ready decision-curve-analysis “Use when evaluating the clinical utility of a binary prediction model from a single clinical CSV file by fitting a logistic decision-curve model, plotting decision and clinical-im…” AIPOCH's own audit: Production Ready decision-tree-analysis “Use when building a decision tree model in R and generating feature importance ranking outputs. Supports classification and regression, automatic task detection, parameter validat…” AIPOCH's own audit: Production Ready deeptools “NGS analysis toolkit. Used for BAM to bigWig conversion, quality control (correlation, PCA, fingerprint plots), heatmaps/feature plots (TSS, peaks), suitable for ChIP-seq, RNA-seq…” AIPOCH's own audit: Production Ready deg-screening-analysis “Use when screening differentially expressed genes from a bulk expression matrix between two user-specified groups, producing DEG tables, a volcano plot, and a clustered heatmap. T…” AIPOCH's own audit: Production Ready diagnostic-study-quality-assessment-quadas “Analyzes clinical diagnostic accuracy studies for bias using the QUADAS-2 tool. Use when Claude needs to assess the quality, risk of bias, or applicability of diagnostic accuracy …” AIPOCH's own audit: Production Ready differential-expression-analysis “Use when analyzing bulk RNA-seq or microarray expression data to identify differentially expressed genes between two biological groups (case vs control), with volcano plots and he…” AIPOCH's own audit: Production Ready dnanexus-integration “DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, process FASTQ/BAM/VCF, for developing and executing genomics p…” AIPOCH's own audit: Production Ready elastic-net-feature-selection “Use when selecting predictive genes or other molecular features from bulk expression matrices for binary case-vs-control classification with elastic net logistic regression, inclu…” AIPOCH's own audit: Production Ready epidemiology “Performs epidemiological analyses including disease modeling (SIR/SEIR), outbreak investigation, risk factor identification, incidence/prevalence estimation, and causal inference …” AIPOCH's own audit: Production Ready estimate-immune-score-analysis “Use this skill to compute ESTIMATE immune-related microenvironment scores from a bulk expression matrix, generate an ESTIMATE score heatmap, and optionally generate group-wise EST…” AIPOCH's own audit: Production Ready etetoolkit “ETE (Environment for Tree Exploration) toolkit for phylogenetic and hierarchical tree analysis; use it when you need to parse/manipulate Newick/NHX trees, detect duplication/speci…” AIPOCH's own audit: Production Ready experimental-data-analysis “Statistical analysis and reporting for experimental datasets; use when you need to interpret experimental results, test significance (t-tests/ANOVA), or generate reproducible repo…” AIPOCH's own audit: Production Ready exploratory-data-analysis “Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand …” AIPOCH's own audit: Production Ready external-model-validation “Use when validating an existing prognostic risk signature on an external bulk expression cohort with survival outcomes, producing risk scores, Kaplan-Meier curves, risk distributi…” AIPOCH's own audit: Production Ready facs-gating-viz-style “Use facs gating viz style for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready fastqc-report-interpreter “Use when analyzing FASTQC quality reports from sequencing data, identifying quality issues in NGS datasets, or troubleshooting sequencing problems. Interprets quality metrics and …” AIPOCH's own audit: Production Ready flowio “Parse Flow Cytometry Standard (FCS) files v2.0–3.1 and extract events/metadata for preprocessing workflows (e.g., when you need NumPy arrays, channel info, or CSV/DataFrame export…” AIPOCH's own audit: Production Ready forest-plot-styler “Analyze data with `forest-plot-styler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” AIPOCH's own audit: Production Ready gene-protein-expression-matrix-normalization “Use when normalizing bulk gene or protein expression matrices with log2 transform, z-score standardization, or min-max scaling before downstream visualization or exploratory analy…” AIPOCH's own audit: Production Ready gene-structure-mapper “Use gene structure mapper for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready geniml “Machine learning toolkit for genomic interval (BED) data; use it when you need to tokenize BED collections and train embeddings for regions/cells/labels, build consensus peak univ…” AIPOCH's own audit: Production Ready geopandas “A Python library for reading, writing, and analyzing geospatial vector data; use it when you need spatial operations (buffer/overlay/join), CRS reprojection, or map visualization …” AIPOCH's own audit: Production Ready gokegg-analysis “Use when performing GO and KEGG enrichment on a gene list from bulk RNA-seq or microarray studies, then generating a combined GO/KEGG dot chart. NOT for single-cell RNA-seq, methy…” AIPOCH's own audit: Production Ready graphical-abstract-wizard “Generate graphical abstract layout recommendations based on paper abstracts.” AIPOCH's own audit: Production Ready gsea “Run GSEA on a ranked gene list and produce the enrichment table, running-score table, and enrichment plots.” AIPOCH's own audit: Production Ready gsva-analysis-and-visualization “Use this skill to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result …” AIPOCH's own audit: Production Ready gtars “A high-performance Rust toolkit (with Python bindings and a CLI) for genomic interval analysis; use it when you need fast overlap queries, coverage track generation, genomic token…” AIPOCH's own audit: Production Ready heatmap-beautifier “Professional beautification tool for gene expression heatmaps, automatically adds clustering trees, color annotation tracks, and intelligently optimizes label layout.” AIPOCH's own audit: Production Ready hierarchical-clustering-plot “Use when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample simil…” AIPOCH's own audit: Production Ready histolab “Digital pathology image processing toolkit for whole slide images (WSI). Supports WSI formats (SVS, TIFF, NDPI), tile-based analysis, and histological image preprocessing workflow…” AIPOCH's own audit: Production Ready immune-pathway-analysis “Run immune pathway GSVA or ssGSEA analysis from a bulk expression matrix, a sample group file, and a local immune Reactome gene-set table, then export differential pathway results…” AIPOCH's own audit: Production Ready km-survival-curve “Use when generating Kaplan-Meier survival curves from tabular survival data containing time, event status, and a precomputed risk group. Supports command-line parameter input, par…” AIPOCH's own audit: Production Ready knn-imputation “Use when filtering genes with high missingness and then imputing missing values in a bulk expression matrix with group-aware KNN through DMwR2, where donor samples are restricted …” AIPOCH's own audit: Production Ready lab-budget-forecaster “Use lab budget forecaster for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready lamindb “This skill is applicable when using LaminDB. LaminDB is an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR-compliant. It is sui…” AIPOCH's own audit: Production Ready lasso-logistics-analysis “Use when building a binary classification model from an expression matrix or other omics feature matrix with LASSO logistic regression, cross-validation, and coefficient path visu…” AIPOCH's own audit: Production Ready lightgbm-analysis “Use when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots.” AIPOCH's own audit: Production Ready lipinski-rule-filter “Filter compound libraries based on Lipinski's Rule of Five for drug-likeness.” AIPOCH's own audit: Production Ready lncrna-regulatory-network-construction-analysis “Use this bioinformatics data analysis skill to construct a database-driven lncRNA-mRNA regulatory network from target lncRNA and/or gene lists by projecting shared miRNA evidence …” AIPOCH's own audit: Production Ready matchms “Process, clean, and compare mass spectrometry (MS/MS) spectra with Matchms; use when you need reproducible spectral filtering and similarity scoring for metabolomics workflows.” AIPOCH's own audit: Production Ready matplotlib “A low-level plotting library for comprehensive customization. Use when fine-grained control over every plot element is needed, creating new types of charts, or integrating into sp…” AIPOCH's own audit: Production Ready mechanism-flowchart “Generates Mermaid flowchart code and visual diagrams for pathophysiological.” AIPOCH's own audit: Production Ready meta-abstract-screener “Screens research papers based on title/abstract and inclusion criteria, providing a structured Yes/No/Maybe decision. Use when you need to filter literature for meta-analysis or s…” AIPOCH's own audit: Production Ready meta-baujat-plot “Generate Baujat plots for heterogeneity analysis. Identify studies that contribute most to the overall meta-analysis results and heterogeneity, helping discover potential outlier …” AIPOCH's own audit: Production Ready meta-criteria-generator “Generates scientifically sound inclusion and exclusion criteria for Meta-Analysis based on a given title or keywords. Use when user wants to design eligibility criteria for a syst…” AIPOCH's own audit: Production Ready meta-feasibility-analyzer “Analyzes the feasibility of a proposed Meta-analysis topic by searching for existing Meta-analyses and Clinical Trials on PubMed/ClinicalTrials.gov. Use when you need to evaluate …” AIPOCH's own audit: Production Ready meta-forest-binary-plot “Generate meta-analysis forest plots for binary classification data. Input is a CSV file containing study names, event counts and sample sizes for experimental and control groups. …” AIPOCH's own audit: Production Ready meta-forest-continuous-plot “Generate forest plots for meta-analysis of continuous data. Input a CSV file containing study names, means, standard deviations, and sample sizes for experimental and control grou…” AIPOCH's own audit: Production Ready meta-forest-model-plot “Generate forest plots for meta-analysis of survival data. Input is a CSV file containing study names, HR and 95% confidence intervals, output forest plot PNG and data table CSV. S…” AIPOCH's own audit: Production Ready meta-funnel-plot “Generate Meta-analysis funnel plots and perform publication bias testing. Takes CSV file with Meta-analysis data as input, outputs funnel plot PNG, Egger test and Begg test result…” AIPOCH's own audit: Production Ready meta-picos-generator “Generates PI(E)COS structure (Population, Intervention, Comparator, Outcomes, Study Design) from Meta-analysis or study titles. Use when the user wants to extract these elements f…” AIPOCH's own audit: Production Ready meta-radial-plot “Generate radial plots (Radial Plot/Galbraith Plot) for heterogeneity analysis. Visually assess heterogeneity across studies by displaying the relationship between standardized eff…” AIPOCH's own audit: Production Ready meta-rob-plot “Draw ROB2 risk-of-bias plots, including a Traffic Light Plot and a Summary Bar Plot. Input is a CSV file with ROB2 assessments for each study; output are two PNG plot files.” AIPOCH's own audit: Production Ready meta-screening-fulltext “Screen full-text papers against inclusion/exclusion criteria, with optional PubMed metadata check using PMID. Use when the user needs to evaluate a paper for a meta-analysis.” AIPOCH's own audit: Production Ready meta-sensitivity-plot “Generate leave-one-out sensitivity analysis plots for meta-analysis. Input is a CSV file containing meta-analysis data; outputs are a sensitivity forest plot (PNG) and a sensitivi…” AIPOCH's own audit: Production Ready meta-title-generator “Generates Meta-Analysis research titles based on user keywords, utilizing PubMed search results if available, or creative generation otherwise. Use when the user wants to brainsto…” AIPOCH's own audit: Production Ready metabolomics-workbench-database “Access NIH Metabolomics Workbench (4,200+ studies) via REST API. Query metabolites, RefMet nomenclature, MS/NMR data, m/z search, study metadata for metabolomics and biomarker dis…” AIPOCH's own audit: Production Ready metagenomic-krona-chart “Analyze data with `metagenomic-krona-chart` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” AIPOCH's own audit: Production Ready model-calibration-curve “Use when assessing how well a survival model's predicted probabilities agree with observed outcomes by fitting a Cox model and generating bootstrap calibration curves at one or mo…” AIPOCH's own audit: Production Ready motif-logo-generator “Generate publication-quality sequence logos for DNA or protein motifs.” AIPOCH's own audit: Production Ready neoantigen-predictor “Predict neoantigens that may be recognized by the immune system based.” AIPOCH's own audit: Production Ready neurokit “Comprehensive biosignal processing for ECG/PPG/EEG/EDA/RSP/EMG/EOG; use when you need to clean, segment, and extract physiological features for HRV, event-related responses, compl…” AIPOCH's own audit: Production Ready neuropixels-analysis “End-to-end Neuropixels extracellular electrophysiology analysis (SpikeGLX/Open Ephys/NWB) including preprocessing, motion correction, Kilosort4 spike sorting, QC metrics, and Alle…” AIPOCH's own audit: Production Ready nomogram-construction “Use when constructing a prognosis nomogram from survival-related clinical predictors, exporting the nomogram bundle and C-index table, and optionally rendering the final nomogram …” AIPOCH's own audit: Production Ready outcome-extraction-for-clinical-trials “Clinical research outcome extraction for meta-analysis. Use when users need to extract outcome measures (binary, continuous, or survival data) from clinical research papers for sy…” AIPOCH's own audit: Production Ready outlier-detection-handler “Use outlier detection handler for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready pathml “A full-featured computational pathology toolkit for advanced WSI analysis, including multiplexed immunofluorescence (CODEX, Vectra), nuclei segmentation, tissue graph construction…” AIPOCH's own audit: Production Ready pathology-roi-selector “Use pathology roi selector for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready pca-dimensionality-reduction “Use when performing PCA principal component dimensionality reduction on tabular numeric data. Supports command-line parameter input, automatic numeric feature selection, parameter…” AIPOCH's own audit: Production Ready phylogenetic-tree-styler “Analyze data with `phylogenetic-tree-styler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” AIPOCH's own audit: Production Ready ppi-network-analysis “Use when you need a standardized R CLI workflow to build a protein-protein interaction network from a local gene list and an offline STRING cache, export node and edge tables, and…” AIPOCH's own audit: Production Ready preclinical-pkpd-analyst “Use preclinical pkpd analyst for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready probast-quality-assessment-for-prediction-model-studies “Assess bias in medical prediction model studies using PROBAST tool. Use when user wants to evaluate the quality or risk of bias of a medical paper (text or PDF).” AIPOCH's own audit: Production Ready protocol-deviation-classifier “Classify clinical trial protocol deviations as major or minor based on ICH E6/GCP guidelines. Three-impact-dimension assessment (safety, data integrity, scientific validity), conf…” AIPOCH's own audit: Production Ready pseudotime-trajectory-viz “Analyze data with `pseudotime-trajectory-viz` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” AIPOCH's own audit: Production Ready pydeseq “Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrink…” AIPOCH's own audit: Production Ready pydicom “A Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when you need to read, write, or modify DICOM format medical imaging…” AIPOCH's own audit: Production Ready pyhealth “Healthcare AI toolkit for clinical ML. EHR processing, clinical prediction (mortality, readmission, drug recommendation), medical coding (ICD/NDC/ATC), signals (EEG/ECG), datasets…” AIPOCH's own audit: Production Ready pyopenms-skill “Comprehensive tool for computational mass spectrometry using PyOpenMS; use when you need to read/write MS formats (mzML/mzXML/MGF), run signal processing (smoothing/peak picking),…” AIPOCH's own audit: Production Ready pysam “Genomic file toolkit. For reading/writing SAM/BAM/CRAM alignment files, VCF/BCF variant files, FASTA/FASTQ sequences, extracting regions, calculating coverage, suitable for NGS da…” AIPOCH's own audit: Production Ready quadas-c-assessment-for-diagnostic-accuracy-studies “Automated bias assessment for diagnostic accuracy studies using QUADAS-C criteria. Requires full text input.” AIPOCH's own audit: Production Ready quality-assessment “Automates critical appraisal and quality assessment for research papers by analyzing text against established methodological standards (such as risk of bias tools, quality checkli…” AIPOCH's own audit: Production Ready quapas-quality-assessment-for-prognosis-studies “Evaluates bias in medical literature (prognosis studies) using QUAPAS criteria. Use when the user wants to assess the quality or risk of bias of a medical paper text.” AIPOCH's own audit: Production Ready rct-bias-assessment-rob “Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report. Use when you need to assess the quality of a clinic…” AIPOCH's own audit: Production Ready rf-model-importance-analysis “Use when you need a standardized R CLI workflow to train a two-class random forest model from an expression-like feature matrix, rank variable importance, and generate reproducibl…” AIPOCH's own audit: Production Ready roc-diagnostic-performance “Use when evaluating diagnostic biomarker performance from case-control expression data with logistic regression and ROC curves, exporting coefficient and AUC tables together with …” AIPOCH's own audit: Production Ready rowan “Cloud-based quantum chemistry platform providing a Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformational sear…” AIPOCH's own audit: Production Ready sample-correlation-analysis “Use when performing correlation analysis between two variables including Pearson and Spearman correlation methods. Supports command-line parameter input, automatic data format det…” AIPOCH's own audit: Production Ready sample-group-sankey-plot “Use when generating Sankey or alluvial plots from sample annotation tables where rows are samples and selected columns are categorical stages such as risk group, response status, …” AIPOCH's own audit: Production Ready sanger-chromatogram-qa “Use sanger chromatogram qa for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready scanpy “Standard single-cell RNA-seq analysis pipeline. For quality control (QC), normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression analysis, a…” AIPOCH's own audit: Production Ready scikit-bio “A Python bioinformatics toolkit for sequence, phylogeny, and microbiome/community-ecology analysis; use it when you need to compute diversity/ordination/statistics from biological…” AIPOCH's own audit: Production Ready scikit-survival “A comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival; use it when you need to model censored time-to-event outcomes, fit Cox/RS…” AIPOCH's own audit: Production Ready scrna-cell-type-annotator “Auto-annotate cell clusters from single-cell RNA data using marker genes.” AIPOCH's own audit: Production Ready scvi-tools “Deep generative models for single-cell omics; use when you need probabilistic batch correction (scVI), transfer learning, uncertainty-aware differential expression, or multimodal …” AIPOCH's own audit: Production Ready seaborn “Statistical visualization library integrated with pandas; use it when you need fast EDA of distributions, relationships, and categorical comparisons (e.g., box/violin/pair plots a…” AIPOCH's own audit: Production Ready sequence-alignment “A skill for performing sequence alignment using NCBI BLAST API. Supports nucleotide and protein sequence comparison against major biological databases.” AIPOCH's own audit: Production Ready shap “Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Feature importance, dependence plots, interaction effects, and fairness analysis for any blac…” AIPOCH's own audit: Production Ready singlecell-portal “Programmatically query public single-cell study metadata from the Broad Institute Single Cell Portal REST API when you need to search and filter datasets by organism, tissue, dise…” AIPOCH's own audit: Production Ready smiles-de-salter “Analyze data with `smiles-de-salter` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” AIPOCH's own audit: Production Ready spatial-transcriptomics-mapper “Map spatial transcriptomics data from 10x Genomics Visium/Xenium onto.” AIPOCH's own audit: Production Ready ssgsea-immune-infiltration-analysis “Use when estimating immune infiltration from bulk RNA-seq expression matrices with ssGSEA/GSVA, comparing case versus control groups, and generating downstream immune-score visual…” AIPOCH's own audit: Production Ready statistical-analysis “Guided statistical analysis for test selection, assumption checks, power analysis, and APA-style reporting. Use when you need to choose an appropriate statistical test for your da…” AIPOCH's own audit: Production Ready statistical-analysis-advisor “Recommends appropriate statistical methods (T-test vs ANOVA, etc.) based.” AIPOCH's own audit: Production Ready study-design-scale-selector “Determines the appropriate Risk of Bias assessment scale for a medical study based on its design (RCT, Cohort, etc.), using PubMed metadata lookup or text analysis. Use when the u…” AIPOCH's own audit: Production Ready survival-analysis-km “Kaplan-Meier survival analysis tool for clinical and biological research. Generates publication-ready survival curves with statistical tests.” AIPOCH's own audit: Production Ready survival-curve-risk-table “Analyze data with `survival-curve-risk-table` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” AIPOCH's own audit: Production Ready svm-model-importance-analysis “Use when you need a standardized R CLI workflow to run two-class SVM-RFE feature ranking on an expression-like matrix, choose an informative feature count from cross-validated err…” AIPOCH's own audit: Production Ready table-1-generator “Automated generation of baseline characteristics tables (Table 1) for clinical research papers.” AIPOCH's own audit: Production Ready table-1-generator-advanced “Generate publication-ready baseline characteristics tables (Table 1) for clinical research papers with automatic variable type detection, appropriate statistics (mean±SD, median[I…” AIPOCH's own audit: Production Ready tf-target-gene-regulatory-network “Use when analyzing transcription factor (TF) regulatory networks using Dorothea database. Input gene list, identify regulating transcription factors, generate TF-Target network vi…” AIPOCH's own audit: Production Ready time-dependent-roc “Use when performing time-dependent ROC curve analysis for survival data with follow-up time, event status, and a numeric marker. Supports CSV/TXT/TSV/Excel input, `risk_score` as …” AIPOCH's own audit: Production Ready tooluniverse-statistical-modeling “Statistical modeling and regression analysis for biomedical data. Linear/logistic/ordinal regression, Cox proportional hazards, mixed-effects models, ANOVA, with odds ratios, haza…” AIPOCH's own audit: Production Ready torchdrug-english “PyTorch-native Graph Neural Network framework for molecules and proteins. Suitable for building custom GNN architectures for drug discovery, protein modeling, or knowledge graph r…” AIPOCH's own audit: Production Ready toxicity-structure-alert “Analyze data with `toxicity-structure-alert` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” AIPOCH's own audit: Production Ready umap-tsne-analysis “Use when performing sample-level dimensionality reduction and visualization on abundance or OTU-style matrices with a companion group file, generating UMAP and/or t-SNE coordinate…” AIPOCH's own audit: Production Ready univariate-multivariable-cox-regression “Use when running prognostic survival analysis on a clinical cohort with time-to-event data to estimate univariate and multivariable Cox proportional hazards models, export result …” AIPOCH's own audit: Production Ready upset-plot-converter “Convert complex Venn diagrams with more than 4 sets to clearer Upset.” AIPOCH's own audit: Production Ready variant-pathogenicity-predictor “Integrate REVEL, CADD, PolyPhen scores to predict variant pathogenicity.” AIPOCH's own audit: Production Ready volcano-plot-labeler “Analyze data with `volcano-plot-labeler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” AIPOCH's own audit: Production Ready volcano-plot-script “Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. Triggered when user needs visualization of gene expression data, p-value vs fo…” AIPOCH's own audit: Production Ready western-blot-quantifier “Automatically identify Western Blot gel bands, perform densitometric analysis, and calculate normalized values relative to loading controls.” AIPOCH's own audit: Production Ready wgcna-analysis “Use when building a weighted gene co-expression network from a bulk expression matrix and a sample group file, filtering variable genes by MAD, identifying co-expression modules w…” AIPOCH's own audit: Production Ready xgboost-analysis “Use when building XGBoost models on tabular data and returning feature importance ranking outputs. Supports binary classification and regression with automatic task detection, tra…” AIPOCH's own audit: Production Ready
Evidence Insight (141) · Health and medicine
acronym-unpacker “Intelligent medical abbreviation disambiguation tool that resolves ambiguous acronyms using clinical context, specialty-specific knowledge, and document-level semantic analysis.” AIPOCH's own audit: Production Ready alphafold-db “Access over 200M protein structures from AlphaFold DB; use when you need to retrieve predicted 3D structures (PDB/mmCIF), confidence metrics (pLDDT/PAE), or protein metadata by Un…” AIPOCH's own audit: Production Ready arboreto “Infer gene regulatory networks (GRNs) from gene expression matrices using GRNBoost2 or GENIE3; use when analyzing bulk or single-cell RNA-seq to identify TF→target regulatory rela…” AIPOCH's own audit: Production Ready arxiv-database “Search and retrieve scientific preprints from arXiv; use it when you need to find papers by keyword/author/category, fetch metadata (abstract, DOI, PDF URL), or download PDFs for …” AIPOCH's own audit: Production Ready basic-discovery-translational-opportunity-finder “Finds translational opportunities that connect basic-research discoveries to clinically meaningful use cases such as diagnosis, stratification, prognosis, treatment response predi…” AIPOCH's own audit: Limited Release bio-ontology-mapper “Map unstructured biomedical text to standardized ontologies (SNOMED CT.” AIPOCH's own audit: Production Ready biogrid-orcs “Accesses BioGRID ORCS CRISPR screen data (organisms, screens, scores). Invoke when user needs to search CRISPR screens, get vocabulary, or retrieve gene scores.” AIPOCH's own audit: Production Ready bioinformatics-translational-opportunity-finder “Identifies translationally meaningful paths for bioinformatics findings by mapping omics or computational discoveries to diagnosis, stratification, prognosis, treatment-response, …” AIPOCH's own audit: Limited Release biomarker-landscape-scanner “Scans the biomarker landscape of a disease area by biomarker type, clinical/research use case, evidence layer, validation status, and maturity level. Use this skill when a user wa…” AIPOCH's own audit: Limited Release biomedical-search-strategy-builder “Builds professional search strategies for PubMed, Embase, Web of Science, and similar databases. Use when a user needs to construct a MeSH-based Boolean query, design a systematic…” AIPOCH's own audit: Production Ready biopython-entrez “Use Bio.Entrez to access NCBI databases (e.g., PubMed/GenBank) for searching, fetching summaries, and downloading records when your workflow needs to call the NCBI E-utilities API…” AIPOCH's own audit: Production Ready biorxiv-database “Search, retrieve metadata, and download PDFs for bioRxiv preprints; use when you need to discover biology preprints by keywords/authors/date ranges and programmatically fetch thei…” AIPOCH's own audit: Production Ready blockbuster-therapy-predictor “Comprehensive analytics tool for forecasting breakthrough therapeutic technologies by integrating multi-dimensional data sources including clinical development pipelines, intellec…” AIPOCH's own audit: Production Ready brenda-database “Programmatic access to the BRENDA enzyme database via the SOAP API; use when you need kinetic constants (Km, kcat, Vmax), reaction equations, enzyme properties (pH/temperature opt…” AIPOCH's own audit: Production Ready cellosaurus-api “Access Cellosaurus database for cell line information and release data. Invoke when user asks to search cell lines, get cell line details by accession, or check database release i…” AIPOCH's own audit: Production Ready cellxgene-census “Programmatically query the CZ CELLxGENE Census (61M+ cells) when you need cross-tissue, disease, or cell-type expression data for population-scale queries and reference atlas comp…” AIPOCH's own audit: Production Ready chea-api “Access ChEA3 and Harmonizome ChEA data for transcription factor enrichment analysis and metadata retrieval. Use when the user needs to perform ChEA3 enrichment analysis on a gene …” AIPOCH's own audit: Production Ready chembl-database “Query the ChEMBL database for bioactive molecules, targets, bioactivities, and approved drugs; use this when you need to filter by physicochemical properties (e.g., MW, LogP), che…” AIPOCH's own audit: Production Ready citation-chasing-mapping “Use when identifying seminal papers in a research field, mapping research lineage and intellectual heritage, discovering related work through reference tracking, or finding potent…” AIPOCH's own audit: Production Ready citation-management “Comprehensive citation management for academic research; use when you need to discover papers (Google Scholar/PubMed), extract/verify metadata (DOI/PMID/arXiv/URL), and produce va…” AIPOCH's own audit: Production Ready citation-network “Build and visualize a citation network from a source/target CSV to identify key papers, communities, and emerging hotspots; use when you have citation pairs and need fast literatu…” AIPOCH's own audit: Production Ready clinical-question-clarifier “Clarifies a vague clinical or biomedical research idea into a structured, bounded, searchable, researchable, and testable question. Always use this skill whenever a user has an ea…” AIPOCH's own audit: Production Ready clinical-study-info-extractor “Batch extracts and verifies structured information (PMID, title, abstract, methodology, results, etc.) from clinical research literature using PMIDs. Use when the user wants to ex…” AIPOCH's own audit: Production Ready clinical-trial-finder “Find clinical trials for a gene, variant, or condition from ClinicalTrials.gov + EUCTR, with FHIR R4 output” AIPOCH's own audit: Production Ready clinicaltrials-database “Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient…” AIPOCH's own audit: Production Ready clinicaltrials-db “Query the ClinicalTrials.gov API v2 to search for clinical trials, retrieve detailed study protocols, and analyze recruitment status; use when you need to find trials by condition…” AIPOCH's own audit: Production Ready clinicaltrials-gov-parser “Monitor and summarize competitor clinical trial status changes from ClinicalTrials.gov.” AIPOCH's own audit: Production Ready clinpgx-database “Access ClinPGx pharmacogenomics data (successor to PharmGKB) when you need to query gene-drug interactions, CPIC guidelines, allele functions, and drug-label PGx content for preci…” AIPOCH's own audit: Production Ready clinvar-database “Utilities for querying the NCBI ClinVar database to retrieve variant records, clinical significance, and phenotype relationships; use when searching variants by gene/condition/sig…” AIPOCH's own audit: Production Ready comparison-table-gen “Auto-generates comparison tables for concepts, drugs, or study results.” AIPOCH's own audit: Production Ready competitor-trial-monitor “Monitor competitor clinical trial progress and alert on market risks.” AIPOCH's own audit: Production Ready concept-explainer “Uses analogies to explain complex medical concepts in accessible terms.” AIPOCH's own audit: Production Ready contradictory-findings-resolver “Explains why studies on the same biomedical topic reach different or opposing conclusions by auditing differences in population, endpoint definition, sample source, assay or platf…” AIPOCH's own audit: Production Ready cosmic-database “Access COSMIC to download mutation datasets, query Cancer Gene Census, and retrieve mutational signatures when your genomic analysis requires curated somatic mutation resources.” AIPOCH's own audit: Production Ready cross-disciplinary-bridge-finder “Use when identifying collaboration opportunities across fields, finding experts in complementary disciplines, translating methodologies between scientific domains, or building int…” AIPOCH's own audit: Production Ready crossref-database “Access CrossRef metadata for scholarly works; use when you need to resolve a DOI or search CrossRef to retrieve bibliographic details, citation/reference counts, or funder informa…” AIPOCH's own audit: Production Ready ctd-api “Accesses Comparative Toxicogenomics Database (CTD) for chemical, gene, disease, and pathway interaction data. Invoke when user needs to query CTD, retrieve toxicogenomics data, or…” AIPOCH's own audit: Production Ready diagnostic-study-quality-assessment-quadas-2 “Analyzes clinical diagnostic accuracy studies for bias using the QUADAS-2 tool. Use when Claude needs to assess the quality, risk of bias, or applicability of diagnostic accuracy …” AIPOCH's own audit: Production Ready diffdock-molecular-docking “Diffusion-based molecular docking to predict 3D ligand–protein binding poses (blind docking) with confidence scoring; use when you need pose prediction for drug discovery or virtu…” AIPOCH's own audit: Production Ready disease-mechanism-evidence-map “Systematically maps mechanism evidence for a disease from molecules to pathways, cell types, tissues, biological consequences, and clinical phenotypes. Always use this skill when …” AIPOCH's own audit: Production Ready drug-interaction-checker “Check for interactions between multiple medications, including severity classification and mechanism explanations.” AIPOCH's own audit: Production Ready drug-target-evidence-landscape “Organizes the evidence and competitive landscape around a drug, target, or pathway by separating disease relevance, tractability, preclinical evidence, clinical evidence, modality…” AIPOCH's own audit: Production Ready drugbank-database “Programmatic access to DrugBank drug and target data; use when you need to download, parse, and analyze DrugBank XML for properties, interactions, pathways, and pharmacology.” AIPOCH's own audit: Production Ready emerging-topic-scout “A real-time monitoring system for identifying "incubation period" research hotspots in biological and medical sciences before they are defined by mainstream journals.” AIPOCH's own audit: Production Ready ena-database “Access the European Nucleotide Archive (ENA) via REST APIs and FTP/Aspera to search and retrieve sequences, raw reads (FASTQ), assemblies, and metadata when you have accession IDs…” AIPOCH's own audit: Production Ready encode-api “Access the ENCODE Project REST API to search for and retrieve biological data (biosamples, experiments, etc.). Use this skill when the user needs to query ENCODE data, search by k…” AIPOCH's own audit: Production Ready encori-api “Access ENCORI (StarBase) database for miRNA-target, RNA-RNA, and other regulatory data. Invoke when user asks to search ENCORI or retrieve regulatory interactions.” AIPOCH's own audit: Production Ready ensembl-database “Access Ensembl REST API for vertebrate genomic data; use when you need gene/ID lookups, sequence retrieval, variant effect prediction (VEP), or homology/assembly coordinate mappin…” AIPOCH's own audit: Production Ready evidence-level-ranker “Ranks papers by evidence family, methodological quality tier, validation depth, and claim discipline; assigns anchor, context-setting, mechanistic support, or caution citation rol…” AIPOCH's own audit: Limited Release fda-database “Query the openFDA API to retrieve FDA regulatory datasets (drugs, devices, adverse events, recalls, submissions, UNII) when you need programmatic safety/regulatory evidence for an…” AIPOCH's own audit: Production Ready fda-guideline-search “Search FDA industry guidelines by therapeutic area or topic.” AIPOCH's own audit: Production Ready figure-first-paper-reader “Reads a paper figure by figure before re-integrating the full narrative, so the user can identify the core findings quickly and check whether each visual actually supports the aut…” AIPOCH's own audit: Production Ready funding-trend-forecaster “Analyze funding abstracts and project metadata to identify topic shifts and forecast near-term grant priorities.” AIPOCH's own audit: Production Ready gene-database “Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you need to search genes by symbol/ID and retrieve annotations (RefSeq, GO, location, phenotype…” AIPOCH's own audit: Production Ready gene-info “Retrieves comprehensive gene information including PubMed publication counts, NCBI summaries, and Ensembl transcript data. Supports batch processing and file input. Invoke when th…” AIPOCH's own audit: Production Ready geo-search-api “Search for gene expression DataSets and Profiles in the NCBI GEO database. Use this skill when the user wants to find microarray, RNA-seq, or other genomic data by keywords, organ…” AIPOCH's own audit: Production Ready gget “Unified CLI/Python interface for querying genomic, proteomic, structure, and expression data across 20+ bioinformatics databases; use when you need fast, scriptable retrieval by g…” AIPOCH's own audit: Production Ready grant-funding-scout “NIH funding trend analysis to identify high-priority research areas.” AIPOCH's own audit: Production Ready grant-gantt-chart-gen “Use grant gantt chart gen for evidence insight workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready gwas-database “Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epidemiology and poly…” AIPOCH's own audit: Production Ready hgnc-api “Access the HGNC (HUGO Gene Nomenclature Committee) database to search for and retrieve gene information including symbols, names, IDs, and other metadata.” AIPOCH's own audit: Production Ready high-value-paper-screener “Quickly judges whether a biomedical paper is worth deep reading by screening for question fit, design quality, sample adequacy, methodological novelty, and reproducibility value.” AIPOCH's own audit: Production Ready hmdb-database “Access the Human Metabolome Database (HMDB) to search metabolites by name/structure/ID and extract chemical/biological/clinical fields when you need metabolomics research data or …” AIPOCH's own audit: Production Ready ib-summarizer “Summarize core safety information from Investigator's Brochures for clinical.” AIPOCH's own audit: Production Ready jaspar-api “Access JASPAR database for transcription factor binding profiles (matrices), collections, and species via REST API. Use when user wants to search for transcription factors, retrie…” AIPOCH's own audit: Production Ready journal-impact-factor-trend “Show journal impact factor and quartile trends over 5 years.” AIPOCH's own audit: Production Ready journal-latest-issue “Retrieve the latest journal issue's table of contents and abstracts from URL/DOI/PMID/RSS/TOC sources, then generate Chinese key points locally (no external translation APIs) when…” AIPOCH's own audit: Production Ready journal-matchmaker “Analyzes academic paper abstracts to recommend optimal journals for submission, considering impact factors, scope alignment, and domain expertise.” AIPOCH's own audit: Production Ready journal-skills “Recommends target journals for manuscript submission by analyzing the paper topic/abstract and the journal distribution of similar PubMed literature; use when users ask for journa…” AIPOCH's own audit: Production Ready kegg-api “Access the KEGG database API to retrieve biological data (genes, pathways, compounds, drugs). Invoke when the user asks to search, list, or get details from KEGG.” AIPOCH's own audit: Production Ready kegg-database “Direct access to KEGG via the REST API for academic-only pathway/gene/compound/drug queries; use when you need precise HTTP-level control or targeted KEGG ID mapping.” AIPOCH's own audit: Production Ready key-takeaways “Extracts and summarizes key takeaways from documents, meeting notes, articles, and other text content. Use when the user asks for summaries, bullet points, main points, highlights…” AIPOCH's own audit: Production Ready keyword-velocity-tracker “Calculate literature growth velocity and acceleration to assess research.” AIPOCH's own audit: Production Ready litbase “Academic paper reading and research development system for biomedical researchers. Finds papers via Semantic Scholar, reads with structured notes, tracks discussion insights, and …” AIPOCH's own audit: Production Ready literature-close-read “Produce a structured close-reading report from a paper's full PDF-to-Markdown text (with `## Page XX` pagination and image references) when you need to systematically extract back…” AIPOCH's own audit: Production Ready literature-experiment-extract “Extract experimental models, experimental methods, and biomarker information from paper Markdown (typically produced by PDF-to-Markdown tools) when a user provides paper Markdown …” AIPOCH's own audit: Production Ready literature-extensive-read “Rapidly skim and summarize academic papers (default:PDF-to-Markdown full text with `## Page XX` pagination and image references) and output a structured extensive-reading summary …” AIPOCH's own audit: Production Ready literature-filtering “Filter literature by publication year, journal, and predefined screening rules to produce inclusion/exclusion lists; use when conducting preliminary screening or systematic review…” AIPOCH's own audit: Production Ready medchem “Medicinal chemistry screening filters for compound prioritization; use when you need to apply drug-likeness rules, PAINS/structural alerts, and complexity metrics to triage or opt…” AIPOCH's own audit: Production Ready medical-research-gap-finder “Identifies real, evidence-audited, topic-specific research gaps in medical research by first retrieving and verifying literature from trusted sources, then mapping the current evi…” AIPOCH's own audit: Production Ready medical-research-literature-reader-pro “A medical-research-native literature reading skill for users with clinical, bioinformatics, translational, and basic experimental backgrounds. Use this skill whenever a user wants…” AIPOCH's own audit: Production Ready medical-topic-saturation-and-whitespace-checker “Maps whether a biomedical research topic, subtopic, or study angle is truly saturated, superficially crowded, strategically occupied, or still open for differentiated entry. Use t…” AIPOCH's own audit: Production Ready medical-vector-search “Vector database retrieval and evidence-based answering for medical research topics. Use when users need knowledge-base-backed answers about methodology, disease mechanisms, drug e…” AIPOCH's own audit: Production Ready method-gap-detector “Detects methodological gaps across study design, analysis, validation, bias control, reproducibility, and implementation readiness within a biomedical research area. Use this skil…” AIPOCH's own audit: Production Ready methodology-extractor “Extract experimental methods from one or more papers into a structured protocol-oriented summary; use when comparing methods across studies or drafting reproducible procedures.” AIPOCH's own audit: Production Ready methods-reverse-engineer “Reverse-engineers the methods section of a biomedical paper into a structured, reproducible workflow. Use this skill when a user wants to understand how a study was actually execu…” AIPOCH's own audit: Production Ready multi-database-literature-collector “Collects candidate biomedical literature across multiple databases, adapts search logic by database, preserves source metadata, and organizes results into a structured, screening-…” AIPOCH's own audit: Production Ready novelty-vs-feasibility-assessor “Assesses whether a medical research topic is worth starting now by separating true novelty from pseudo-novelty, auditing real feasibility under stated resource constraints, and fo…” AIPOCH's own audit: Production Ready open-access-scout “Use when finding open access journals, checking journal policies, or identifying predatory publishers. Helps researchers locate legitimate open access venues and avoid publication…” AIPOCH's own audit: Production Ready open-source-license-check “Check if referenced bioinformatics software/code licenses allow commercial use (GPL vs MIT, etc.).” AIPOCH's own audit: Production Ready open-targets-db “Query the Open Targets Platform to retrieve targets, diseases, or evidence records when you need target-disease association data and evidence-based scores for therapeutic discover…” AIPOCH's own audit: Production Ready openalex-db “Access the OpenAlex database (240M+ scholarly works) for bibliometric analysis, literature search, and citation tracking; use when you need to query works/authors/institutions/con…” AIPOCH's own audit: Production Ready paper-lookup “Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles. Covers PubMed, PMC (full text), bioRxiv, medRxiv, arXiv, OpenAlex, Crossre…” AIPOCH's own audit: Production Ready paper-to-claim-verifier “Verifies whether a scientific or biomedical claim is actually supported by the cited original papers rather than by citation drift, overstatement, selective citation, or correlati…” AIPOCH's own audit: Production Ready patent-claim-mapper “Use when mapping patent claims to products, analyzing patent infringement, or preparing freedom-to-operate analyses. Compares patent claims against product features for biotech an…” AIPOCH's own audit: Production Ready patent-landscape “Use when analyzing biotech patent landscapes, identifying white spaces in pharmaceutical IP, tracking competitor patents, or assessing freedom to operate for drug development. Pro…” AIPOCH's own audit: Production Ready pathway-introduction-expert “Generates comprehensive academic introductions for biological pathways, including signaling processes, markers, and inhibitors. Use when the user asks to introduce a pathway, mole…” AIPOCH's own audit: Production Ready pdb-database “Access the RCSB Protein Data Bank (PDB) to search, download, and programmatically retrieve 3D macromolecular structures and metadata; use when you need structure discovery (text/s…” AIPOCH's own audit: Production Ready pdf-extract-experimental-materials “Extract experimental materials and instrument information from PDFs (or PDF-derived text/Markdown) into three CSV tables; use when a paper/report contains sections like Materials …” AIPOCH's own audit: Production Ready phenotype-introduction “Expert system for generating comprehensive biomedical phenotype introductions with structured academic content. Use when users request detailed explanations of cellular phenotypes…” AIPOCH's own audit: Production Ready pmc-official-download “Download PubMed/PMC literature using officially permitted PMC methods. Whenever the user wants to download PMC full text, batch-retrieve PMC Open Access Subset articles, save full…” AIPOCH's own audit: Production Ready population-gap-detector “Detects overlooked, underrepresented, weakly resolved, or poorly validated populations and subgroups within a biomedical research area so users can identify more precise and meani…” AIPOCH's own audit: Production Ready preprint-surveillance-finder “Tracks the latest preprints and emerging research topics related to your topic across bioRxiv, medRxiv, and arXiv. Use when a user wants to discover what is being published right …” AIPOCH's own audit: Production Ready pubchem-database-skill “Programmatic access to the PubChem database (via PUG-REST API and PubChemPy) for searching chemical compounds, retrieving physicochemical properties, performing structure similari…” AIPOCH's own audit: Production Ready pubmed-database “Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use t…” AIPOCH's own audit: Production Ready pubmed-search-specialist “Build complex Boolean query strings for precise PubMed/MEDLINE literature retrieval. Trigger when user needs MeSH term mapping, Boolean query construction, advanced PubMed filters…” AIPOCH's own audit: Production Ready pubmed-topic-recommend “Generate ~5 actionable research topic recommendations by querying PubMed E-utilities; use when a user provides a research direction/constraints and needs evidence-backed topic ide…” AIPOCH's own audit: Production Ready pytdc “Therapeutics Data Commons (PyTDC) for AI-ready therapeutic ML datasets and benchmarks; use it when you need standardized dataset loading, meaningful splits (e.g., scaffold/cold-st…” AIPOCH's own audit: Production Ready rare-disease-hpo-mapper “Map patient symptoms to Human Phenotype Ontology terms for gene diagnosis.” AIPOCH's own audit: Production Ready rct-bias-assessment-rob2 “Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report. Use when you need to assess the quality of a clinic…” AIPOCH's own audit: Production Ready reactome-skill “Query the Reactome REST API for pathway content and enrichment analyses; use when you need curated pathway data, reaction details, or overrepresentation results for a gene list.” AIPOCH's own audit: Production Ready reagent-substitute-scout “Find validated alternative reagents based on literature citation data.” AIPOCH's own audit: Production Ready reference-finder “Automatically finds and ranks PubMed references for each sentence in scientific text; use when you need titles, DOIs, and brief recommendation reasons from the PubMed E-utilities …” AIPOCH's own audit: Production Ready reference-retrieval-skill “Based on user input, directly find relevant literature or automatically construct PubMed Boolean search queries to retrieve and filter references suitable for citation. Applicable…” AIPOCH's own audit: Production Ready reference-search “Multi-database literature search and search-strategy design that outputs structured, reproducible result lists; use when you need reference retrieval, systematic searching, review…” AIPOCH's own audit: Production Ready research-article-weekly “Generates a weekly academic literature report based on keywords using PubMed. Use when the user wants to track recent research progress on a specific topic, automatically retrievi…” AIPOCH's own audit: Production Ready research-hotspot-analysis “Analyze research hotspots for a disease or topic and recommend representative literature. Use when users need to identify trending directions, topic clusters, or generate hotspot …” AIPOCH's own audit: Production Ready research-paper-downloader “Download academic papers from open-access sources when the user provides a DOI/arXiv ID or requests a keyword-based paper search, and return the saved PDF path.” AIPOCH's own audit: Production Ready result-reliability-checker “Assesses whether study results are trustworthy by auditing design integrity, sample structure, statistical handling, bias control, validation chain, and claim discipline. It ident…” AIPOCH's own audit: Production Ready retraction-watcher “Automatically scan reference lists and check whether cited papers have been retracted, corrected, or flagged; use before submission, review, or evidence synthesis to reduce citati…” AIPOCH's own audit: Production Ready scholar-evaluation “Implements the ScholarEval framework to evaluate scholarly documents; trigger when the user provides a PDF/DOCX/TXT file or pasted text and requests critique, scoring, or quality …” AIPOCH's own audit: Production Ready scientific-critical-thinking “Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scien…” AIPOCH's own audit: Production Ready scientific-podcast-summary “Automatically summarize scientific podcasts like Huberman Lab and Nature.” AIPOCH's own audit: Production Ready scite-database “Access Scite.ai Smart Citations to classify how a paper is cited (supporting, contrasting, mentioning) and assess scientific claims; use it when you need to evaluate a paper’s rel…” AIPOCH's own audit: Production Ready sds-msds-risk-scanner “Extract hazard codes and safety info from chemical safety datasheets.” AIPOCH's own audit: Production Ready semantic-scholar-database “Access the Semantic Scholar Graph API to search papers and retrieve paper/author/citation data when you need literature discovery or citation graph exploration.” AIPOCH's own audit: Production Ready smart-journal-monitor “Use smart journal monitor for evidence insight workflows that need structured execution, explicit assumptions, and clear output boundaries.” AIPOCH's own audit: Production Ready string-database “Access the STRING database to map identifiers, retrieve protein–protein interaction networks, and run functional/PPI enrichment when you need interaction context for a gene/protei…” AIPOCH's own audit: Production Ready study-design-identifier “Identifies the real underlying study design used in a medical or biomedical paper, distinguishes primary and secondary design components when papers are hybrid, and converts the p…” AIPOCH's own audit: Production Ready systematic-review-screener “Automated abstract screening tool for systematic literature reviews with PRISMA workflow support.” AIPOCH's own audit: Production Ready target-novelty-scorer “Score the novelty of biological targets through literature mining and.” AIPOCH's own audit: Production Ready tooluniverse-clinical-trial-matching “AI-driven patient-to-trial matching for precision medicine and oncology. Given a patient profile (disease, molecular alterations, stage, prior treatments), discovers and ranks cli…” AIPOCH's own audit: Production Ready tooluniverse-literature-deep-research “Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction. Creates a detailed report with mandatory completeness chec…” AIPOCH's own audit: Production Ready topic-evidence-mapper “Rapidly maps the evidence landscape around a medical topic by organizing major research streams, target populations, endpoints, methods, evidence density, and thin areas. Use this…” AIPOCH's own audit: Limited Release translational-gap-analyzer “Assess translational gaps between preclinical models and human diseases.” AIPOCH's own audit: Production Ready uniprot-database “Direct REST API access to UniProt for protein search, entry retrieval, and identifier mapping; use when you need programmatic UniProtKB queries or cross-database ID conversion.” AIPOCH's own audit: Production Ready unmet-clinical-need-extractor “Extracts concrete unmet clinical needs from guidelines, reviews, real-world studies, and clinical-practice evidence. Use this skill when a user wants to turn broad medical researc…” AIPOCH's own audit: Production Ready unstructured-medical-text-miner “Mine unstructured clinical text from MIMIC-IV to extract diagnostic logic.” AIPOCH's own audit: Production Ready variant-annotation “Query and annotate gene variants from ClinVar and dbSNP databases. \n\.” AIPOCH's own audit: Production Ready venue-templates “Venue-specific LaTeX templates, formatting requirements, and submission guidelines for journals, conferences, posters, and grants—use when a target venue imposes strict layout, pa…” AIPOCH's own audit: Production Ready zinc-database “Access the ZINC (230M+ purchasable compounds) database when you need to look up compounds by ZINC ID/SMILES, run similarity/analog searches, or download 3D ready-to-dock structure…” AIPOCH's own audit: Production Ready
Other (114) · Health and medicine
academic-cv-generator “Generate structured academic CVs from free-form Chinese/English text and export to Word (.docx). Use this skill when you are asked to organize, generate, or optimize an academic C…” AIPOCH's own audit: Production Ready academic-norm-review “Detects content similarity, verifies standardized citations and abbreviations, and flags potential academic integrity risks; use it before submission, during academic writing QA, …” AIPOCH's own audit: Production Ready academic-poster-generator “Complete workflow for generating academic research posters from PDF literature; use when you need to extract paper content from PDFs and produce a LaTeX-based poster (beamerposter…” AIPOCH's own audit: Production Ready adaptyv “Cloud laboratory platform for automated protein testing and validation; use when you have designed protein sequences and need wet-lab experimental validation (e.g., binding, expre…” AIPOCH's own audit: Production Ready api-design-principles “Principles and checklists for designing and reviewing REST and GraphQL APIs; use when defining or evaluating API contracts (endpoints/schemas), naming, error models, pagination, v…” AIPOCH's own audit: Production Ready article-format-adjustment “Adjust academic paper formatting and convert between DOCX/LaTeX/Markdown when you need to meet a journal or school template requirement.” AIPOCH's own audit: Production Ready benchling-integration “Integrate with the Benchling R&D platform when you need to programmatically manage registry entities, inventory, ELN entries, workflows, events, or data warehouse analytics via AP…” AIPOCH's own audit: Production Ready bianque “Evidence-based medical knowledge and research mentor grounded in the Bian Que tradition. Covers clinical reasoning, diagnostic thinking (望闻问切), pharmacology, pathology, differenti…” AIPOCH's own audit: Production Ready bib-formatter “Convert reference lists and in-text citations between RIS, BibTeX, plain text, and CSL-JSON, triggered when you need to unify bibliography/citation styles before journal submissio…” AIPOCH's own audit: Production Ready bibliography “Classifies and organizes literature by theme, method, and conclusion; use when you need to batch-read a folder of PDF/MD/DOCX/TXT files and output a structured CSV for literature …” AIPOCH's own audit: Production Ready biodbnet-api “Access bioDBnet REST services for biological identifier conversion, pathway retrieval, and ortholog mapping. Use when you need to convert gene/protein IDs, find pathways, or retri…” AIPOCH's own audit: Production Ready bmi-bsa-calculator “Calculate Body Mass Index (BMI) and Body Surface Area (BSA) for clinical assessment, obesity screening, and chemotherapy dosing. Supports multiple BSA formulas (DuBois, Mosteller,…” AIPOCH's own audit: Production Ready brainstorming “Creative exploration and brainstorming; use it when you need to clarify goals/constraints, explore multiple options, and converge on a direction before implementation.” AIPOCH's own audit: Production Ready buffer-calculator “Calculate precise buffer recipes with accurate mass and volume measurements for molecular biology and biochemistry. Supports PBS, RIPA, and TAE with concentration scaling, stock s…” AIPOCH's own audit: Production Ready chart-style-unifier “Batch-unify typography (font family, size, italics) for Word table cells and embedded charts; use when you need consistent formatting across theses/reports without changing body t…” AIPOCH's own audit: Production Ready chemical-storage-sorter “Sort laboratory chemicals into safe storage groups by hazard classification (acids, bases, oxidizers, flammables, toxics). Identifies incompatible pairs, generates storage plans w…” AIPOCH's own audit: Production Ready chemical-structure-converter “Convert between IUPAC names, SMILES strings, molecular formulas, and common names for chemical compounds. Supports SMILES validation, batch processing, structure standardization, …” AIPOCH's own audit: Limited Release clinic-sample-size “Unified tool for calculating sample sizes for Diagnostic, Efficacy, Etiology, and Prognosis clinical studies. Supports various statistical methods (Sensitivity/Specificity, Log-ra…” AIPOCH's own audit: Production Ready clinical-diagnostic-reasoning “Identify and counteract cognitive biases in medical decision-making through systematic error analysis and contextual algorithm application. For diagnostic reasoning, treatment dec…” AIPOCH's own audit: Production Ready clinical-reports “Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient…” AIPOCH's own audit: Production Ready co-tank-monitor “IoT monitoring simulation to predict CO2 tank depletion and prevent weekend gas outages in cell culture facilities. Monitors cylinder pressure, calculates consumption rates, provi…” AIPOCH's own audit: Production Ready cold-chain-risk-calculator “Calculate temperature excursion risks for cold chain transport. Assesses route risk, packaging suitability, and monitoring requirements for biological samples and pharmaceuticals …” AIPOCH's own audit: Limited Release conference-tweet-generator “Generates academic conference tweets and summaries by filtering abstracts, translating content, and creating engaging titles. Use when you need to process conference abstracts int…” AIPOCH's own audit: Production Ready conflict-of-interest-checker “Check for co-authorship and institutional conflicts between authors and suggested reviewers to support peer review integrity. Coauthorship and institutional conflict detection sup…” AIPOCH's own audit: Production Ready content-proofreading “An academic proofreading skill for Chinese/English manuscripts, triggered when you need automated checks for spelling, grammar, terminology consistency, and formatting before subm…” AIPOCH's own audit: Production Ready datamol “A Pythonic wrapper around RDKit with simplified interfaces and sensible defaults. Preferred for standard drug discovery workflows including SMILES parsing, standardization, descri…” AIPOCH's own audit: Production Ready date-calculator “Calculate medical date windows including gestational age, estimated delivery dates, and follow-up visit scheduling. Produces structured JSON output for clinical research and trial…” AIPOCH's own audit: Production Ready dicom-anonymizer “De-identify DICOM medical images by removing PHI tags for research sharing, with audit logging and study-linkage preservation support.” AIPOCH's own audit: Production Ready docx-feedback-tracker “Automatically detect DOCX track-changes history, version rounds, and author feedback to generate a Markdown modification explanation file when you run it on one or more DOCX versi…” AIPOCH's own audit: Production Ready dpi-upscaler-checker “Check if images meet 300 DPI printing standards, and intelligently restore blurry low-resolution images using AI super-resolution technology.” AIPOCH's own audit: Limited Release ebm-calculator “Evidence-Based Medicine diagnostic test calculator. Computes sensitivity, specificity, PPV, NPV, likelihood ratios, NNT, and pre/post-test probability.” AIPOCH's own audit: Production Ready equipment-maintenance-log “Track lab equipment calibration dates and send maintenance reminders for pipettes, balances, centrifuges, and other instruments. Validates date formats and supports update/delete …” AIPOCH's own audit: Production Ready experiment-detail-comparator “Compare experimental method details between two Zotero PDF papers, identify protocol differences (ratios, dosages, timing, conditions), search supporting literature to explain why…” AIPOCH's own audit: Production Ready expert-interview-generator “Generates a full expert interview article including introduction, Q&A body, and summary based on interview questions and expert background. Use when you have interview questions a…” AIPOCH's own audit: Production Ready expert-interview-topics “Generates professional interview titles and questions based on expert background and topic. Provides a structured workflow for interview preparation.” AIPOCH's own audit: Production Ready file-management “Organize, back up, compress, split, and merge files/folders using rule-driven plans; use when you need safe previews, conflict handling, and verification before executing file ope…” AIPOCH's own audit: Production Ready file-search “Perform fast file name and content searches with ripgrep (rg); use it when you need to locate files by glob/regex, find keywords across directories, or replace common find/grep wo…” AIPOCH's own audit: Production Ready file-security-toolkit “Encrypt/decrypt local files, redact sensitive information in documents, and validate password strength when handling private data or preparing files for sharing.” AIPOCH's own audit: Production Ready fulltext-fetcher “Fetch and save the original HTML of scientific literature webpages when given a URL, DOI, or PubMed PMID (triggered when you need archival-grade page HTML for downstream parsing o…” AIPOCH's own audit: Production Ready hippocrates “Evidence-based medical knowledge and research mentor. Trigger this skill when users ask any question related to medicine, clinical science, pharmacology, pathology, epidemiology, …” AIPOCH's own audit: Production Ready html-to-pdf “Convert HTML files or URLs to high-fidelity PDFs using Puppeteer; auto-detects or forces RTL for Hebrew/Arabic when RTL content is present.” AIPOCH's own audit: Production Ready icd10-cpt-coding-assistant “Parse clinical notes and recommend ICD-10-CM diagnosis codes and CPT procedure codes with confidence scoring. Cross-references diagnoses with procedure codes, generates alternativ…” AIPOCH's own audit: Production Ready id-photo-tool “Replace an ID photo background color (blue/white/red) and/or add a configurable text watermark when you need compliant ID-photo variants from local JPG/PNG files.” AIPOCH's own audit: Production Ready image-ocr “Extract text from images with Tesseract OCR; use it when you need to recognize text from PNG/JPEG/TIFF/BMP images, select a language model, or run OCR via natural-language request…” AIPOCH's own audit: Production Ready image-processing “Batch-convert and compress local images with Pillow; use when you need an offline, scriptable pipeline for directory-based processing.” AIPOCH's own audit: Production Ready imagegenskill “Generate renderable, scientific-style SVG graphics directly from natural-language requirements (no image models). Use when users ask for an image/picture/scientific diagram/visual…” AIPOCH's own audit: Production Ready iso-certification “A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS. Use when you need to perform a documentation gap analysis, draft or update a Quality Man…” AIPOCH's own audit: Production Ready journal-recommender “Recommend academic journals based on manuscript topic, abstract, and impact factor expectations. Use when the user wants to find suitable journals for their research manuscript, e…” AIPOCH's own audit: Production Ready knowledge-base-search “Search and locate relevant content within a local knowledge base (files, indices, or PageIndex). Use when you need verifiable citations (file + page/paragraph) to support answers …” AIPOCH's own audit: Production Ready kv-design “Generate professional Key Visual (KV) design proposals and images; use when you have a slogan/copy and a marketing scenario but need a clear visual direction and a ready-to-genera…” AIPOCH's own audit: Production Ready lab-inventory-predictor “Predict depletion time of critical lab reagents based on historical usage frequency, and automatically generate purchase alerts when stock falls below safety thresholds.” AIPOCH's own audit: Limited Release lab-prep-calculations “Perform pre-experiment calculations and generate step-by-step preparation protocols for dilutions, solution preparation, dissolution, and % concentrations when planning formulatio…” AIPOCH's own audit: Production Ready lab-result-interpretation “Transforms biochemical lab test results into clear, patient-friendly explanations. Covers blood routine, lipid panel, liver/kidney function, thyroid, electrolytes, and inflammatio…” AIPOCH's own audit: Production Ready learning-tutoring “Learning tutoring planning and content production skill for creating study plans, generating exercises, writing answer explanations, and providing review/adjustment guidance; trig…” AIPOCH's own audit: Production Ready literature-management “Import local literature into a managed library; trigger when you need offline deduplication, tagging, and a searchable index.” AIPOCH's own audit: Production Ready literature-statistics “Generate statistics for publication-year and journal distributions from local references or PDFs; use when you need standardized Year/Journal tables and a summary without any netw…” AIPOCH's own audit: Production Ready literatureimages-interpretation “Interpret figures in academic papers and their captions when the input is a PDF-to-Markdown document with page markers and image links, producing a structured Markdown report for …” AIPOCH's own audit: Production Ready market-research-report-generator “Generates professional market research reports by analyzing business intent, decision levels, and conducting multi-source data retrieval (Web, PubMed, Clinical Trials).” AIPOCH's own audit: Production Ready markitdown “Convert files and Office documents into clean Markdown when you need LLM-friendly, token-efficient text (e.g., for summarization, search, RAG ingestion, or dataset preparation).” AIPOCH's own audit: Production Ready medical-case-interpreter “Generates compliant medical case report articles for WeChat.” AIPOCH's own audit: Production Ready medical-case-report-generator “Generates a patient-friendly medical case report tweet from case images and disease name. Use when the user provides a medical case image and wants a structured report or tweet.” AIPOCH's own audit: Production Ready medical-unit-converter “Convert medical laboratory values between units (mg/dL to mmol/L, etc.) with formula transparency and clinical reference ranges. Supports glucose, cholesterol, creatinine, and hem…” AIPOCH's own audit: Production Ready medication-reconciliation “Compare patient pre-admission medication lists with inpatient orders to automatically identify omitted or duplicated medications and improve medication safety.” AIPOCH's own audit: Production Ready meeting-assistant “Extracts key meeting information in chronological order and outputs decisions and action items; use when you need meeting minutes, action tracking, or project sync notes from tran…” AIPOCH's own audit: Production Ready meeting-minutes-generator “Generates structured meeting minutes from text transcripts. Use when the user provides text content and wants a structured summary with a signature.” AIPOCH's own audit: Production Ready mendel “Gregor Mendel — genetics mentor, patient experimenter, and gardener-monk. Trigger this skill when users ask about genetics, heredity, inheritance patterns, Mendelian laws, dominan…” AIPOCH's own audit: Production Ready meta-search-builder “Medical literature search strategy generator. Given a user's natural-language description (e.g., meta-analysis topic, PICOS elements, research question), automatically extract med…” AIPOCH's own audit: Production Ready microscopy-scale-bar-adder “Add accurate, publication-ready scale bars to microscopy images given pixel-to-unit calibration data.” AIPOCH's own audit: Production Ready mindmap “Generate mindmaps locally/offline with native HTML/CSS/JS (no external libraries); use when you need to parse Plain Text node structures or map LLM outputs into an on-device visua…” AIPOCH's own audit: Production Ready mindmap-helper “Organize requirements into Markdown/JSON mind map structures; use when you need a hierarchical outline for mind map tools (e.g., XMind, ProcessOn, FreeMind) or for documentation p…” AIPOCH's own audit: Production Ready mindmap-html-generator “Generate offline interactive mindmap HTML and convert Markdown, outlines, meeting notes, chapter structures, or JSON trees into markmap-compatible format. Use when organizing long…” AIPOCH's own audit: Production Ready multi-panel-figure-assembler “Assemble 6 sub-figures (A–F) into a high-resolution composite figure with consistent labels, padding, and publication-ready DPI.” AIPOCH's own audit: Limited Release multi-source-news-writer “Integrates multiple news sources into a single, cohesive press release using an inverted pyramid structure and AP style. Use when you have raw news content and a topic, and need a…” AIPOCH's own audit: Production Ready note-summarizer “Organize study notes into a structured knowledge-point outline and export to a .docx summary when you need a shareable, hierarchical document from Word/PPT/Text/Markdown inputs.” AIPOCH's own audit: Production Ready paper-tweet-generator “Generates a structured reading tweet from an academic paper (PDF, Word, or Text), highlighting specific product advantages. Use when the user wants to turn a document into a socia…” AIPOCH's own audit: Production Ready patient-consent-simplifier “Simplifies informed consent documents into patient-friendly language while maintaining regulatory compliance. Readability assessment targeting 6th-8th grade level, risk/benefit cl…” AIPOCH's own audit: Production Ready pdf-extract “Extract PDF selectable text and full-page or segmented page images (including tables) into Markdown with per-page headings and image links; use when you need both readable text an…” AIPOCH's own audit: Production Ready pdf-ppt “Create literature-report PPTX decks from PDF papers. Use when you must extract a paper’s metadata, summarize the study, interpret Results/Figures/Tables, and generate slides with …” AIPOCH's own audit: Production Ready pdf-processor “Perform basic local PDF operations (merge, split, extract pages/text/tables, create) when users request offline PDF processing without external services.” AIPOCH's own audit: Production Ready pdf-to-ppt-pack “Convert research paper PDFs into literature-report PPTX decks using a fully offline workflow (extract text/figures, map captions, summarize findings, and generate slides). Use whe…” no audit report phi-prompt-guard “Runtime, prompt-time behavioral guardrail that helps reduce PHI exposure in LLM-assisted workflows by detecting PHI-bearing prompts, avoiding unsafe tool actions that would pull m…” AIPOCH's own audit: Production Ready plan-generator “Automatically generates a Markdown final-exam review plan or lab experiment schedule when you provide a date range, tasks/items, and available daily hours (via interactive prompts…” AIPOCH's own audit: Production Ready plotly “Interactive visualization library for Python. Use it when you need hover tooltips, zoom/pan, selection, animations, or charts embeddable in web pages (e.g., dashboards, explorator…” AIPOCH's own audit: Production Ready postdoc-fellowship-matcher “Filter and match postdoctoral fellowship opportunities based on applicant nationality, years since PhD, and research field from a curated database.” AIPOCH's own audit: Production Ready poster-designer “Generate professional poster design concepts and optimized image-generation prompts, then automatically run a drawing script to produce the final poster image when a user needs a …” AIPOCH's own audit: Production Ready ppt “Create and export PPTX decks using the local HTML/JS PPT framework in `D:\SKILL\project\ppt`. Use this when you need to generate slides from a topic/outline, edit slide content vi…” AIPOCH's own audit: Production Ready ppt-master “AI-driven multi-format SVG content generation system. Converts source documents (PDF/DOCX/URL/Markdown) into high-quality SVG pages and exports to PPTX through multi-role collabor…” AIPOCH's own audit: Production Ready pptx-posters “Generate PowerPoint presentations and academic posters from paper abstracts or full paper content, with automatic layout optimization and citation formatting.” AIPOCH's own audit: Production Ready pptx-skill “Create, edit, and extract content from PowerPoint (.pptx) files; use when you need to generate slides programmatically, update existing decks, or export slide previews.” AIPOCH's own audit: Production Ready reagent-expiry-alert “Scan reagent barcodes or IDs, log expiration dates, and generate multi-level alerts before reagent expiry to support laboratory inventory management.” AIPOCH's own audit: Production Ready reproducibility-check “Comprehensive reproducibility tool — audit Methods completeness for replication AND promote open science best practices (pre-registration, FAIR data, code sharing, replication des…” AIPOCH's own audit: Production Ready resubmission-deadline-tracker “Track manuscript resubmission deadlines and automatically generate phase-appropriate task breakdowns for academic researchers based on remaining time.” AIPOCH's own audit: Production Ready result-figure-consistencycheck “Checks consistency between paper result descriptions and figure legends (text-only) when the input is a PDF-to-Markdown full text containing page breaks (e.g., `## Page XX`) and l…” AIPOCH's own audit: Production Ready schedule-management “Local schedule management for adding events, tracking deadlines, generating reminders, and detecting time conflicts when users need offline scheduling with optional popup notifica…” AIPOCH's own audit: Production Ready sci-paper-reviewer “Simulates a strict SCI peer-review workflow; trigger when a user uploads or pastes a manuscript (PDF/DOC/DOCX/TXT) and requests an innovation score (1–12) plus experimental-logic …” AIPOCH's own audit: Production Ready science-popularization-article “Generates science popularization articles with titles and outlines based on medical topics and style preferences. Invoke when user needs to create medical/science popular content …” AIPOCH's own audit: Production Ready scientific-schematics “Automates publication-quality scientific diagrams (e.g., flowcharts, architectures, pathways) when you need journal/poster-ready visuals from a natural-language description.” AIPOCH's own audit: Production Ready search-pubmed “An intelligent tool for precision medical literature search using PubMed's E-utilities API.” AIPOCH's own audit: Production Ready shift-handover-summarizer “Generate structured shift handover summaries from EHR records, highlighting critical events, vital sign changes, and pending tasks for incoming clinical staff.” AIPOCH's own audit: Production Ready short-video-script-generator “Generate popular science short video scripts based on topic, duration, and style. Invoke when the user needs to create scripts for short science videos.” AIPOCH's own audit: Production Ready slide-deck-images “Generate professional slide-deck SVG images (not PPTX/PDF) when users ask to “create slides / slide deck / PPT” and need image outputs.” AIPOCH's own audit: Production Ready soft-article-writer “Generates high-quality promotional soft articles with structured outlines, tailored introductions, and optimized titles based on product info and hot topics. Use when you need to …” AIPOCH's own audit: Production Ready spreadsheet-ops “Spreadsheet processing and analysis for CSV/Excel; trigger when users ask to merge/clean tabular data, run statistics, add/edit Excel formulas, apply formatting, generate charts, …” AIPOCH's own audit: Production Ready symptom-checker-triage “Suggest triage levels (Emergency, Urgent, Outpatient) based on red flag symptoms using a rule-based engine. For AI-assisted decision support only — not a substitute for profession…” AIPOCH's own audit: Production Ready task-reminder “Organize scattered tasks into actionable lists and generate daily/weekly/deadline reminder plans when you need a structured schedule and exportable outputs (MD/CSV), with optional…” AIPOCH's own audit: Production Ready text-format-organizer “A local text formatting organizer for biomedical/academic writing; use it when you need to clean whitespace/line endings while preserving Markdown structures or when normalizing .…” AIPOCH's own audit: Production Ready text-to-technical-roadmap “Converts research text into a Mermaid technical roadmap flowchart. Use when the user provides research proposals, experiment designs, or scientific text and asks for a roadmap or …” AIPOCH's own audit: Production Ready time-zone-planner “Plan cross-time-zone meeting windows for distributed teams, providing region-by-region local time mappings and tradeoff analysis for scheduling decisions.” AIPOCH's own audit: Production Ready treatment-plans “Generate concise (typically 1–4 pages) patient-centered medical treatment plans in LaTeX/PDF when a clinician needs an actionable plan with SMART goals, evidence-based interventio…” AIPOCH's own audit: Production Ready uspto-database “Access USPTO data (Patent Search, PEDS, TSDR, assignments) when you need to query patents/trademarks and retrieve prosecution or status information programmatically.” AIPOCH's own audit: Production Ready vector-text-fixer “Fix garbled text in PDF/SVG vector graphics caused by font encoding issues, making files editable in AI tools. Supports batch processing and JSON export for manual correction.” AIPOCH's own audit: Production Ready virtual-patient-roleplay “Simulate standardized patient encounters for medical training, supporting OSCE-style history-taking practice, communication skills rehearsal, and educational debriefing.” AIPOCH's own audit: Production Ready waste-disposal-guide “Guide for disposing specific chemical wastes into the correct colored waste containers, with safety precautions and regulatory compliance notes.” AIPOCH's own audit: Production Ready word-read-write “Create and read Microsoft Word (.docx) documents. Use this skill when you need to generate reports/letters/templates as .docx or extract readable text from existing .docx files.” AIPOCH's own audit: Production Ready
Protocol Design (71) · Health and medicine
active-comparator-single-soc-faers-safety-comparison “Generates complete FAERS pharmacovigilance study designs for multi-drug or class-level safety comparison inside one predefined SOC or AE family using active comparators, dispropor…” AIPOCH's own audit: Production Ready adaptive-trial-simulator “Design and simulate adaptive clinical trials with interim analyses, decision rules, and operating-characteristic summaries; use when planning adaptive designs or comparing stoppin…” AIPOCH's own audit: Production Ready aim-and-hypothesis-designer “Designs primary aims, secondary aims, and testable hypotheses from broad biomedical research ideas. Use this skill when a user needs to convert a loose study idea into a tighter p…” AIPOCH's own audit: Production Ready animal-and-cell-validation-planner “Designs cell-based and animal-based validation plans that translate computational, omics, biomarker, genetic, or clinical findings into experimentally testable validation routes. …” AIPOCH's own audit: Production Ready basic-research-design “A biomedical research topic designer that generates progressive experimental subtitles and detailed research outlines based on a given subject. Use when the user wants to design a…” AIPOCH's own audit: Production Ready bidirectional-multi-phenotype-mr-research-planner “Generates complete bidirectional multi-phenotype Mendelian randomization research designs from a user-provided exposure family and outcome family. Always use this skill whenever a…” AIPOCH's own audit: Production Ready bulk-omics-integrative-planner “Designs complete integrated research plans for bulk transcriptomics, proteomics, metabolomics, and related omics from a user-provided biomedical direction. Always use this skill w…” AIPOCH's own audit: Production Ready case-control-study-planner “Design a structured case-control study framework with explicit source population logic, control selection rules, matching decisions, exposure measurement planning, and bias-contro…” AIPOCH's own audit: Production Ready clinic-research-design “Generates a structured prompt framework for clinical study protocols. Supports Diagnostic, Efficacy, Etiology, and Prognosis studies. Calculates sample size and provides logic gui…” AIPOCH's own audit: Production Ready clinical-cohort-protocol-designer “Designs retrospective or prospective clinical cohort study protocols for biomedical and clinical research. Always use this skill when the user needs a cohort-based study plan rath…” AIPOCH's own audit: Production Ready clinical-trial-protocol-skill “Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]",…” AIPOCH's own audit: Production Ready comorbidity-common-immune-biomarker-research-planner “Generates complete comorbidity-oriented shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction. Use when a study links two cli…” AIPOCH's own audit: Production Ready comparative-network-toxicology-shared-mechanism-reference-grounded “Generates complete comparative network-toxicology research designs from a user-provided exposure pair, shared toxic phenotype, and validation direction. Use when a study centers o…” AIPOCH's own audit: Production Ready confounder-and-bias-control-planner “Plans confounder control, variable adjustment logic, and bias mitigation strategies at the protocol stage for clinical, epidemiologic, translational, observational, and biomarker …” AIPOCH's own audit: Production Ready conventional-non-oncology-hub-gene-research-planner “Generates complete conventional non-oncology bioinformatics research designs from a user-provided disease context, process-related gene family or biological theme, and validation …” AIPOCH's own audit: Production Ready conventional-oncology-hub-gene-research-planner “Generates complete conventional oncology bulk-transcriptome biomarker and hub-gene research designs from a user-provided cancer type and study direction. Always use this skill whe…” AIPOCH's own audit: Production Ready cross-disease-shared-biomarker-network-research-planner “Generates complete cross-disease shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction. Always use this skill whenever a user…” AIPOCH's own audit: Production Ready drug-repurposing-study-planner “Design evidence-discovery and validation workflows for drug repurposing studies by integrating disease mechanisms, drug-target logic, expression reversal, real-world evidence, and…” AIPOCH's own audit: Production Ready dual-disease-shared-transcriptome-biomarker-research-planner “Generates complete dual-disease shared-transcriptome biomarker and hub-gene research designs from a user-provided disease pair and shared-biology direction. Always use this skill …” AIPOCH's own audit: Production Ready dual-disease-transcriptomic-ml-planner “Generates complete dual-disease transcriptomic + machine learning research designs from a user-provided disease pair. Use when users want to identify shared DEGs, common hub genes…” AIPOCH's own audit: Production Ready endpoint-definition-designer “Designs primary, secondary, and exploratory endpoints for biomedical and clinical research protocols. Always use this skill when a user needs to translate study aims into operatio…” AIPOCH's own audit: Production Ready esm “Toolkit for protein language models (ESM3 for multimodal generative protein design; ESM C for efficient embeddings). Use when you need sequence/structure/function generation or pr…” AIPOCH's own audit: Production Ready experiment-design “Design scientific experiments including sample size calculation, randomization, control groups, blinding, and study protocols. Covers RCTs, quasi-experiments, factorial designs, A…” AIPOCH's own audit: Production Ready faers-multi-drug-soc-planner “Generates complete FAERS-based multi-drug single-SOC safety comparison research designs from a user-provided drug set, comparator, and adverse event domain. Always use this skill …” AIPOCH's own audit: Production Ready faers-pharmacovigilance-disproportionality-research-planner “Generates complete FAERS-style pharmacovigilance disproportionality research designs from a user-provided drug class, comparator strategy, adverse-event domain, and patient-group …” AIPOCH's own audit: Production Ready feasibility-aware-study-planner “Designs a realistic, execution-aware biomedical study version under explicit constraints of samples, time, budget, data access, lab capacity, team skill, and validation resources.…” AIPOCH's own audit: Production Ready generic-phenotype-scoring-research-planner “Generates complete phenotype-scoring bioinformatics research designs for any disease context and any user-defined phenotype, pathway, process, signature, or molecular program. Use…” AIPOCH's own audit: Production Ready hypogenic “Automated LLM-driven hypothesis generation and testing for tabular datasets; use when you need systematic exploration of empirical patterns (e.g., fraud detection, content analysi…” AIPOCH's own audit: Production Ready hypothesis-generation “Structured scientific hypothesis formulation from observations; use when you have experimental observations or preliminary data and need testable hypotheses with predictions, mech…” AIPOCH's own audit: Production Ready inclusion-criteria-gen “Generate and optimize clinical trial subject inclusion/exclusion criteria to balance scientific rigor with recruitment feasibility.” AIPOCH's own audit: Production Ready inclusion-exclusion-criteria-builder “Builds clear, executable, and auditable inclusion and exclusion criteria for biomedical and clinical research protocols. Always use this skill when a user needs to translate a tar…” AIPOCH's own audit: Production Ready inplasy-registration-helper “Assists researchers in generating INPLASY registration content for meta-analyses from a title and optional protocol. Use when the user wants to draft a INPLASY registration form.” AIPOCH's own audit: Production Ready mechanism-to-validation-planner “Extends a mechanistic or association-level biomedical finding into a staged validation pathway that moves from descriptive evidence toward stronger functional support, mechanistic…” AIPOCH's own audit: Production Ready medical-research-algorithm-matcher “Matches a user’s biomedical research direction, disease problem, study aim, data modality, and resource constraints to the most relevant recent algorithms and method papers. Alway…” AIPOCH's own audit: Production Ready medical-research-gap-to-study-planner “Converts an audited medical research gap into a complete, structured, gap-traceable study design. Always use this skill whenever a user already has one or more candidate research …” AIPOCH's own audit: Production Ready mendelian-randomization-protocol-designer “Generates complete Mendelian randomization study designs from a user-provided exposure and outcome direction. Always use this skill whenever a user wants to design, plan, or build…” AIPOCH's own audit: Production Ready meta-protocol-writer “Generates a PROSPERO-compliant Meta-analysis protocol based on Title and PICOS. Use when the user wants to write a protocol for a systematic review or meta-analysis.” AIPOCH's own audit: Production Ready mr-scrna-research-planner “Generates complete Mendelian Randomization + single-cell transcriptomics (scRNA-seq) research designs from a user-provided direction. Always use this skill whenever a user wants …” AIPOCH's own audit: Production Ready multi-omics-clinical-integration-planner “Designs complete research plans that integrate clinical variables with multi-omics data from a user-provided biomedical direction. Always use this skill whenever a user wants to d…” AIPOCH's own audit: Production Ready network-tox-docking-research-planner “Generates complete network toxicology + molecular docking research designs from a user-provided toxicant and disease/phenotype. Always use this skill when users want to investigat…” AIPOCH's own audit: Production Ready nhanes-clinical-retrospective-biomarker-research-planner “Generates complete NHANES-style cross-sectional epidemiology + retrospective clinical validation research designs from a user-provided disease and biomarker direction. Always use …” AIPOCH's own audit: Production Ready non-tumor-mechanism-guided-diagnostic-ml-research-planner “Generates complete conventional non-oncology diagnostic machine-learning research designs from a user-provided disease context, optional mechanism theme, and validation direction.…” AIPOCH's own audit: Production Ready non-tumor-ml-research-planner “Generates complete non-tumor biomedical machine learning research designs from a user-provided research direction. Always use this skill when users want to plan bioinformatics + M…” AIPOCH's own audit: Production Ready pcd-immune-oncology-research-planner “Generates complete programmed-cell-death (PCD) / regulated-cell-death (RCD) bulk-transcriptome oncology research designs from a user-provided disease and mechanism theme. Always u…” AIPOCH's own audit: Production Ready primary-plan-recommender “Compares multiple study-route options for the same biomedical research question and recommends one primary plan, while explicitly explaining why alternative routes are secondary, …” AIPOCH's own audit: Production Ready process-related-diagnostic-biomarker-nomogram-research-planner “Generates complete process-related diagnostic biomarker bioinformatics research designs from a user-provided disease context, gene-family or pathway theme, and validation directio…” AIPOCH's own audit: Production Ready prognostic-biomarker-protocol-designer “Designs discovery, modeling, and validation workflows for prognostic biomarkers in biomedical and clinical research. Always use this skill when the user needs a prognostic biomark…” AIPOCH's own audit: Production Ready prospero-registration-helper “Assists researchers in generating PROSPERO registration content for meta-analyses from a title and optional protocol. Use when the user wants to draft a PROSPERO registration form.” AIPOCH's own audit: Production Ready protocol-standardization “Standardize fragmented experimental steps into reproducible protocol documents when you need method organization, lab SOP drafting, or cross-operator reproducibility; missing para…” AIPOCH's own audit: Production Ready qtl-colocalization-study-planner “Designs QTL colocalization studies that connect eQTL, pQTL, sQTL, or related molecular QTL signals with GWAS loci. Always use this skill whenever a user wants to plan, scope, or s…” AIPOCH's own audit: Production Ready randomization-gen “Generates randomization sequences for RCTs including simple, blocked, and stratified allocation. Produces sealed randomization lists ready for allocation concealment.” AIPOCH's own audit: Production Ready real-world-evidence-study-designer “Designs a structured real-world evidence study using EHR, claims, or registry data, with explicit handling of time zero, eligibility windows, exposure definitions, outcome windows…” AIPOCH's own audit: Production Ready research-grants “Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan's NSTC when you need agency-compliant narratives, budgets, and review-criteria alignment for a specific s…” AIPOCH's own audit: Production Ready research-proposal-generator “Generates a comprehensive research proposal design based on input literature, including hypothesis, mechanism verification, and budget. Use when the user wants to design a researc…” AIPOCH's own audit: Production Ready sample-size-and-power-planning-assistant “Plans sample size estimation logic, power assumptions, feasibility checks, and fallback enrollment strategies for clinical and translational study protocols.” AIPOCH's own audit: Production Ready sample-size-basic “Basic sample size estimator for clinical research planning. Computes per-group and total N for two-sample/paired t-tests, chi-square tests, and proportion comparisons, reporting a…” AIPOCH's own audit: Production Ready single-cell-research-planner “Designs complete single-cell research plans from a user-provided biomedical direction. Always use this skill whenever a user wants to design, scope, or structure a single-cell stu…” AIPOCH's own audit: Production Ready single-compound-network-toxicology-disease-link-reference-grounded “Generates complete single-compound network-toxicology research designs from one exposure, one disease or toxic phenotype, and a validation direction. Use when a study centers on o…” AIPOCH's own audit: Production Ready single-drug-adverse-effect-hub-first-network-pharmacology “Generates complete reference-grounded single-drug adverse-effect network-pharmacology research designs from a user-provided drug, adverse event, and desired evidence depth. Always…” AIPOCH's own audit: Production Ready single-drug-adverse-effect-pathway-anchored-network-pharmacology “Generates complete reference-grounded single-drug adverse-effect network-pharmacology research designs from a user-provided drug, adverse event, and desired evidence depth. Always…” AIPOCH's own audit: Production Ready single-drug-faers-safety-profile-research-planner “Generates complete FAERS pharmacovigilance study designs for one-drug whole-profile safety mapping using signal detection, subgroup analysis, onset/seriousness characterization, a…” AIPOCH's own audit: Production Ready single-gene-oncology-reference-grounded-research-planner “Generates complete conventional single-gene oncology research designs from a user-provided cancer context, target gene, and validation direction. Use when a study centers on a fix…” AIPOCH's own audit: Production Ready sop-writer “Write GCP-compliant standard operating procedures for laboratory, clinical, or research workflows; use when a reproducible SOP with roles, steps, and control points is required.” AIPOCH's own audit: Production Ready study-objective-refiner “Refines broad, vague, or aspirational biomedical research objectives into clear, bounded, measurable, executable, and downstream-ready study objective statements. Always use this …” AIPOCH's own audit: Production Ready tooluniverse-clinical-trial-design “Strategic clinical trial design feasibility assessment using ToolUniverse. Evaluates patient population sizing, biomarker prevalence, endpoint selection, comparator analysis, safe…” AIPOCH's own audit: Production Ready translational-study-blueprint “Designs a translational blueprint for moving a biomedical finding toward diagnosis, prognosis, treatment response prediction, patient stratification, or therapeutic development, w…” AIPOCH's own audit: Production Ready treatment-response-predictor-planner “Designs studies for predicting treatment response or resistance in biomedical and clinical research. Always use this skill when the user needs a treatment-response or resistance p…” AIPOCH's own audit: Production Ready tumor-immune-infiltration-diagnostic-ml-research-planner “Generates complete tumor immune-infiltration-guided bulk-transcriptome diagnostic biomarker and machine-learning research designs from a user-provided cancer type and study direct…” AIPOCH's own audit: Production Ready two-sample-mr-exposure-screening-reference-grounded “Generates complete two-sample Mendelian randomization research designs from a user-provided outcome, exposure or exposure family, and robustness direction. Use when a study center…” AIPOCH's own audit: Production Ready two-sample-mr-research-planner “Generates complete two-sample Mendelian randomization (MR) research designs from a user-provided research direction. Use when users want to design, plan, or build a study using tw…” AIPOCH's own audit: Production Ready validation-strategy-designer “Designs internal, external, temporal, and functional validation strategies at the protocol stage for medical research studies.” AIPOCH's own audit: Production Ready