Skills that any specialist can use
A skill is a written skill, such as a guide to difference-in-differences estimation or to codebook development. Research projects publish skills under their own licences, and the catalogue records who maintains each one so that credit stays with its authors.
Catalogue with provenance in place90 bundled with e2er · 410 documented in RISE from 16 projects · 600 found in AIPOCH, Medical Research Skills
Economist Personabase You reason as a rigorous empirical economist. You prioritize: used in 3 templates · 1 published study · loaded by 4 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Researcher Personabase You operate as a senior academic researcher in the field of the study in front of you, held to that field's own standards of evidence. used in 10 templates · 1 published study · loaded by 8 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
`identification_spec.json` — Identification Strategist Sidecarcausal-inference Your prose strategy in `identification_strategy.md` is read by humans and reviewers. This sidecar is its **machine-readable core**: the one primary specification the paper stands on, declared precisely enough that the pipeline can verify — deterministically, without a reviewer — that the econometrics specialist actually estimated it. used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Judge and Examiner Designscausal-inference Judge (or examiner) designs exploit the quasi-random assignment of cases to decision-makers who vary in their treatment propensity. When cases are assigned to judges, patent examiners, disability adjudicators, or caseworkers through a process that is as-if random (conditional on time and location), the decision-maker's leniency serves as an instrument for the treatment they impose. used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Natural Experiments: Taxonomy and Evaluationcausal-inference An exogenous event, institutional rule, or policy change assigns units to treatments as-if randomly, without researcher control. Credibility depends on: used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Sensitivity Analysis for Causal Inferencecausal-inference No observational study can prove that unobserved confounding is absent. Sensitivity analysis asks: how large would unobserved confounding need to be to overturn the estimated causal effect? This shifts the question from "is there confounding?" (unanswerable) to "how much confounding would be needed?" (quantifiable and interpretable). used in 9 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Shift-Share (Bartik) Instrumentscausal-inference A shift-share instrument has the form: 1 example template No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Weak Instrumentscausal-inference An instrument is "weak" when it is only slightly correlated with the endogenous variable. Formally, the concentration parameter (a function of the first-stage coefficients and the covariance structure) is small. Under weak instruments: 1 example template No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Allium queries via the gatekeeper CLIdata This skill applies when the pipeline runs under `LLM_BACKEND=claude_code` (Claude Code CLI). In that mode you have **no direct access to Allium's HTTP API**. Instead, you invoke the bash command `e2er-data allium`, which validates your query against the same 5 guardrails as the JSON-tool `query_allium` (used in API-backend mode), then forwards approved queries to Allium and reports results back. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Allium Developer-tier API (when SQL Explorer is unavailable)data If `e2er-data allium list-tables` returns empty or `Allium run failed`, the account is on the **Developer tier**, not Explorer. The SQL surface (`feasibility`, `production`, `list-tables`, `describe-table`, `distinct-values`) is NOT available — using it wastes the rate budget. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Blockchain Data Skilldata Blockchain data is: used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Bring Your Own Data (BYOD)data When the data module is disabled (`DATA_MODULE_ENABLED=false`) or the researcher has uploaded files via `POST /api/papers/{id}/files`, the pipeline runs without Allium. Specialists work with researcher-supplied files directly. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Data Cleaning Best Practices for Economics Researchdata Clean data is the foundation of credible empirical work. This guide covers systematic approaches to data cleaning for economic datasets, with emphasis on panel data, survey data, and administrative records commonly used in applied economics. used in 10 templates · 1 published study · loaded by 4 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Crypto & DeFi Data Skilldata SELECT block_timestamp, tx_hash, pool_address, token_in, token_out, amount_in_usd, amount_out_usd, sender AS trader FROM ethereum.defi.ez_dex_swaps WHERE platform = 'uniswap-v3' AND block_timestamp >= '2023-01-01' ORDER BY block_timestamp; used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Data tables: declared, loaded, counteddata The data a study uses lives as tables in the paper's `data.db`. Three specialists share one contract about them. used in 3 templates · 1 published study · loaded by 4 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
`estimation_results.json` for a descriptive study — the results schemadata A descriptive study reports what the data look like: how many observations, the summary statistics of each variable, how the values are distributed, and the figures that show it. It estimates no effect and tests no causal claim. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Eurostat via `e2er-data eurostat`data Eurostat publishes the official statistics of the EU, its member states and regions: national and regional accounts, prices (HICP), labour market, population and migration, health, education, energy, environment, trade, tourism, agriculture; several thousand datasets, many by NUTS region (NUTS 1, 2 and 3). used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
NASA Exoplanet Archive via `e2er-data exoplanets`data The NASA Exoplanet Archive (NASA Exoplanet Science Institute, IPAC/Caltech) lists every confirmed exoplanet (6,445 in the composite table in October 2026) with its orbit, size, mass and host star, compiled from the refereed literature. e2er queries its TAP service with ADQL. No key is needed. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Figure Specification Formatdata When producing figures, output a `figure_spec.json` file with actual data values. The pipeline renders these specs into publication-quality PDFs deterministically. Do NOT write matplotlib/seaborn code or attempt to generate figures yourself. used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
FRED via `e2er-data fred`data Federal Reserve Economic Data — the gold standard for US (and increasingly global) macro time series. Free, ~30s to register at https://fredaccount.stlouisfed.org/apikey. Once `FRED_API_KEY` is set in `.env`, every `e2er-data fred …` subcommand works. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
ESA Gaia Archive via `e2er-data gaia`data ESA's Gaia mission measured positions, parallaxes, proper motions and brightness of about 1.8 billion stars; Data Release 3 (DR3) is served by the Gaia ESA Archive through a TAP service queried with ADQL. e2er reads the main table, `gaiadr3.gaia_source`, and any other archive table with `query`. No key is needed. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Eurostat GISCO boundaries via `e2er-data gisco`data Boundaries of the EU's statistical regions (NUTS 0 to 3, versions 2003 to 2024) and of countries, as GeoJSON geometries in data.db, to map regional data (Eurostat's NUTS tables) and to build spatial weights. Non-commercial use; maps carry the EuroGeographics notice. Website: https://ec.europa.eu/eurostat/web/gisco. No key is needed. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
GitHub via `e2er-data github`data The GitHub REST API (https://api.github.com) describes public repositories: their stars, forks, open issues, watchers, main language and bytes per language, licence, topics, creation and last-push dates, number of contributors, and releases. e2er loads metadata only, never repository contents, and no personal fields beyond the owner's account name (no e-mail addresses, no contributor identities). used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Global Macro Database via `e2er-data gmd`data The Global Macro Database (GMD, https://www.globalmacrodata.com) has annual data on 46 macroeconomic variables for 239 economies, from 1086 to the present, with forecasts for the next years. It comes in versioned quarterly releases (e.g. `2026_09`). No key is needed. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Project Gutenberg via `e2er-data gutenberg`data Project Gutenberg offers about 75,000 books whose U.S. copyright has expired, most in English, also French, German, Finnish, Dutch, Portuguese, Spanish and others: novels, poetry, drama, essays, history, philosophy, early science. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
`estimation_results.json` for a meta-analysis — the results schemadata A systematic review with a meta-analysis reports the flow of records, the included studies' effects and the pooled estimate with its heterogeneity. Its template declares `results = "metaanalysis"`. In the `systematic-review` template the file is written by e2er's own `run_estimation.py` (source: `src/modules/metaanalysis/stats.py`) from the checked extraction; nobody writes it by hand. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
NASA POWER via `e2er-data nasa_power`data NASA's Prediction Of Worldwide Energy Resources (POWER) project, at NASA Langley Research Center, serves daily, monthly and annual weather and solar parameters for any place on Earth since 1981. The values are grid-cell estimates from NASA's MERRA-2 reanalysis (temperature, precipitation, humidity, wind, pressure) and CERES satellite products (solar radiation), not station measurements. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Natural Earth via `e2er-data naturalearth`data Country boundaries of the world (Natural Earth, release v5.1.2, 1:110m, 1:50m, 1:10m) as GeoJSON geometries in data.db, to map country data (World Bank, WHO, OWID) by ISO3 code. Public domain. Website: https://www.naturalearthdata.com/. No key is needed. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
NOAA Climate Data Online via `e2er-data noaa` (needs a free token)data NOAA's National Centers for Environmental Information (NCEI) serve daily weather-station records from the Global Historical Climatology Network - Daily (GHCN-Daily) through the Climate Data Online (CDO) web services: maximum and minimum temperature, precipitation, snowfall and snow depth per station and day, for stations worldwide, some reaching back to the 1800s. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Our World in Data via `e2er-data owid`data Our World in Data (OWID) publishes about 5,000 charts on health, demography, economic development, poverty, energy, emissions, education, food and conflict, by country and year, compiled from the WHO, the UN, the World Bank, academic datasets and OWID's own work. `owid chart` loads the data behind one chart with the metadata of each indicator: who produced the data and under which licence. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Querying the local data warehouse with `e2er-data query`data When the researcher's data has been imported into this paper's SQLite warehouse, your context contains a **"Local Data Warehouse (data.db)"** block listing every table — its columns + types, row count, and a few sample rows. Run **read-only SQL** against that warehouse with the `e2er-data query` command (via Bash): used in 3 templates · 1 published study · loaded by 4 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
`estimation_results.json` for a spatial study — the results schemadata A spatial study describes how a variable varies across places: the spatial units, the variable by unit, whether neighbouring units are alike (spatial autocorrelation, e.g. Moran's I), where clusters lie, and the maps that show it. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Spatial statistics in practice: units, boundaries, weights, Moran's I, clusters, mapsdata For the `spatial-analysis` template. The results file follows `data/spatial-results-schema`; this skill says what the template's checks require and how to do the analysis well. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
`summary_statistics.json` — Data Analyst Sidecardata After the data acquisition + cleaning + variable construction is complete, you write the descriptive statistics of the assembled analysis dataset to a machine-readable JSON file: `summary_statistics.json`. used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Table Specification Formatdata When producing a results table, output a `table_spec.json` file that declares the table's STRUCTURE. A regression table has specifications as columns and coefficients / statistics as rows (below); a table of statistics, categories or periods has entries of the results as rows (`"layout": "records"`, further below). The pipeline fills the numbers used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
`estimation_results.json` for a text study — the results schemadata A text study counts and models language in a corpus: how many documents, tokens and distinct words; which terms are frequent, overall and by group (period, author, genre); and what a text model (keyness, topics, sentiment lexicon, embeddings) finds. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
`estimation_results.json` for a time-series study — the results schemadata A time-series study models one series (or a few) over time and forecasts it: which model was fitted, how well it fits, what it forecasts with what uncertainty, and how it did on data it was not fitted on. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
USGS Earthquake Catalog via `e2er-data usgs`data The ANSS Comprehensive Earthquake Catalog (ComCat), served by the U.S. Geological Survey's FDSN event web service (https://earthquake.usgs.gov/fdsnws/event/1/), lists earthquakes worldwide: time, latitude, longitude, depth, magnitude and magnitude type, location uncertainties, the network that reported each event and its review status. No key is needed. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Data Visualization Guide for Economics Researchdata Use when showing the relationship between two continuous variables across units. 1 example study No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
WHO Global Health Observatory via `e2er-data who_gho`data The WHO Global Health Observatory (GHO) holds WHO's health statistics for its 194 member states and WHO regions: life expectancy and healthy life expectancy, mortality by cause and age, maternal and child health, immunization coverage, HIV, tuberculosis and malaria, noncommunicable disease risk factors (tobacco, alcohol, obesity, blood pressure), health workforce, health spending, universal… used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
World Bank Open Data via `e2er-data worldbank`data World Bank Open Data serves development indicators by country and year through the Indicators API (https://api.worldbank.org/v2/). The default database is the World Development Indicators (WDI, about 1,500 series, 1960 to the latest year, about 217 economies plus regional and income-group aggregates); `--database` reaches the others (3 Worldwide Governance Indicators, 6 International Debt… used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Yahoo Finance via `e2er-data yfinance`data Free public market data — equities, ETFs, mutual funds, crypto, FX, indices. No API key. Goes through the same `e2er-data` gatekeeper that fronts Allium and the other data sources. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Difference-in-differences in practice: design, modern estimators, pre-trends, sensitivityeconometrics For the `policy-evaluation` template. Read `econometrics/did` for the basic equation; this skill says what the template's checks require and how to meet them with the estimators the recent literature recommends (Roth, Sant'Anna, Bilinski and Poe 2023 survey it). No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Difference-in-Differenceseconometrics $$Y_{it} = \alpha + \beta \cdot \text{Post}_t \cdot \text{Treated}_i + \gamma_i + \delta_t + \varepsilon_{it}$$ used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 1 example template, 13 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
`estimation_results.json` — Econometrics Specialist Sidecareconometrics When you actually run estimation (not just specify the model on paper), you write the point estimates, standard errors, test statistics, and diagnostic numbers to a machine-readable JSON file: `estimation_results.json`. Robustness specifications go into the optional `robustness_results.json`. used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Financial Event Studieseconometrics A financial event study measures the impact of an event (announcement, regulation, shock) on security prices by estimating abnormal returns — the difference between actual returns and expected returns absent the event. The method exploits the assumption that in efficient markets, prices adjust quickly to new information. used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 1 example template, 13 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Instrumental Variables Estimationeconometrics OLS is inconsistent when an endogenous regressor is correlated with the error term. Sources: omitted variables, simultaneity, measurement error. IV methods resolve this by isolating exogenous variation through instruments. used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 1 example template, 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Panel Data Methodseconometrics Panel data (longitudinal data) tracks the same units (individuals, firms, countries) across multiple time periods. The repeated observations allow researchers to control for unobserved time-invariant heterogeneity, which is the central advantage of panel methods over cross-sectional analysis. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 1 example template, 13 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Regression Discontinuity Designeconometrics Regression discontinuity (RD) exploits a known threshold in a running variable (also called score, forcing variable, or assignment variable) that determines treatment assignment. Units just above and just below the cutoff are assumed to be comparable in all respects except treatment status, creating a local quasi-experiment at the cutoff. 1 example template, 5 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Time Series Econometricseconometrics Time series methods model the temporal dependence structure in financial and economic data. The core challenge is distinguishing genuine predictability from spurious correlation induced by persistence, non-stationarity, or structural breaks. 1 example study No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
BibTeX Conventions for Economicslatex Guidelines for maintaining clean, consistent, and complete BibTeX databases for economics research. These conventions follow the norms of top economics journals and the `natbib` citation system. used in 9 templates · 1 published study · loaded by 1 specialist · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
LaTeX Conventions for Economic Modelslatex Guidelines for typesetting economic theory in LaTeX. Follow these conventions to produce clean, readable, publication-quality mathematical economics. used in 5 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
LaTeX Tables for Economics Publicationslatex Guidelines for producing publication-ready regression tables, summary statistics, and other tabular output in economics papers. These conventions follow the style of top economics journals (AER, QJE, Econometrica, REStud, JPE). loaded by 1 specialist No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Optimization Verificationmath This skill covers computational verification of optimization problems: KKT conditions, second-order conditions, comparative statics, and economic applications. All code should be self-contained Python using numpy, scipy, sympy. used in 5 templates · 1 published study · loaded by 1 specialist · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Mathematical Proof Strategiesmath This skill guides the selection and implementation of computational proof methods. The goal is to translate mathematical propositions into self-contained Python scripts that produce a clear VERDICT: PROVED, DISPROVED, or INCONCLUSIVE. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Descriptive analysis: describing a sample so others can trust the descriptionmethods A descriptive study says what the data look like: how many observations, which values they take, how those values are distributed, how two variables move together, and what the data cannot show. It estimates no effect. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Systematic review and meta-analysis: protocol, search, screening, extraction, synthesismethods A systematic review answers a question from all the studies that meet criteria fixed in advance; a meta-analysis pools their effects. Read by the protocol designer, the study screener, the study extractor and the review writer of the `systematic-review` template, and by the reviewers. The template follows the PRISMA 2020 statement (Page et al. 2021, `page2021prisma`). used in 1 template · loaded by 4 specialists · Examples: 1 example study No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Text analysis: a corpus you can trace, counts anyone can redomethods A text study counts and models language in a corpus: which words are frequent, which are key in one part of the corpus against another, which words keep company, how often the words of a dictionary occur, which topics a topic model finds, and how all of this changes over time. loaded by 1 specialist No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Time series and forecasting: a setup fixed in advance, an honest testmethods A time-series study describes how one series (or a few) moves over time and forecasts it: its trend and seasonal pattern, whether it is stationary, which models describe it, what they forecast with what uncertainty, and how well they did on data they were not fitted on. Read by the forecast designer and the analysis specialist of the `time-series-forecasting` template, and by the reviewers. loaded by 1 specialist No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Asset Pricing and Factor Modelsmodeling Asset pricing studies why different securities earn different average returns. The central question: are return differences compensation for risk, or evidence of mispricing? The field operates through two main empirical approaches: cross-sectional regressions (Fama-MacBeth) and portfolio sorts. loaded by 1 specialist No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Game Theory for Platform Economics & IS Researchmodeling This skill covers game theory as used in IS and platform economics research: strategic interaction in platform markets, mechanism design for digital systems, auction theory, and computational methods for verifying equilibria. used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Market Microstructuremodeling Market microstructure studies how the mechanics of trading — order flow, dealer behavior, information asymmetry, and market design — affect price formation, liquidity, and transaction costs. It bridges financial theory (efficient markets, rational expectations) with the institutional reality of how markets operate. used in 4 templates · 1 published study · loaded by 1 specialist · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Anti-Slop Writing Standardsreasoning Academic papers fail not from being wrong, but from being vague. Apply these rules to every sentence you write. used in 11 templates · 1 published study · loaded by 8 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Argument Coherence Auditreasoning A publishable paper makes a single coherent argument. Every section exists to advance that argument. This procedure identifies where the argument breaks down -- where claims are unsupported, where sections don't connect, and where the reader would lose the thread. used in 8 templates · 1 published study · loaded by 1 specialist · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Creative Research Ideationreasoning Generate novel, feasible research ideas that a top economist would find worth pursuing. The best ideas start with a real-world phenomenon that demands explanation, not with a gap in the literature. used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Identification Strategy Reasoningreasoning Before any regression, answer these questions in writing: used in 3 templates · 1 published study · loaded by 2 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Novelty and Contribution Positioningreasoning A paper's contribution is not what it does -- it's what it does that hasn't been done before. But the *motivation* for the paper must come from the world, not from the literature. The strongest papers start with a phenomenon, puzzle, or paradox that demands explanation, and only then show that existing knowledge does not resolve it. used in 3 templates · 1 published study · loaded by 1 specialist · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Writing the Replication Planreplication You plan the computational reproduction of one published study. You read; you do not run anything and you do not change the package. used in 1 template · loaded by 1 specialist No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Reproduction Protocolreplication Rules for rerunning a published study from its replication package. They follow the distinctions the Institute for Replication uses and that mass-reproduction studies apply (Brodeur et al., 2025): a result is checked with the authors' own data and code first, and only then, separately, with other choices. used in 1 template · loaded by 2 specialists No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Writing the Reproduction Reportreplication You compare what the sandbox run produced with the published numbers, one by one, and level each result by the reproduction protocol. You do not rerun anything. used in 1 template · loaded by 1 specialist No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Consistency Checkreview This skill describes how to perform a mechanical number verification audit on an academic paper draft. The goal is to cross-reference every quantitative claim in the text against the source artifacts (data summaries, estimation output, analysis results) and flag any discrepancies. used in 10 templates · 1 published study · loaded by 4 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Constructive Feedback Review — Best Practicesreview Transform raw feedback (which may be harsh, dismissive, or unconstructively negative) into a professional, constructive review. The output should be honest about weaknesses but always actionable, respectful, and oriented toward improvement. The goal: the author reads the review and knows exactly what to fix and feels motivated to do so. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Data Review Checklist for Empirical Economicsreview Data quality determines the credibility of empirical research. No econometric method can fix fundamentally flawed data. This checklist provides a systematic approach to reviewing data used in economics research -- whether you are checking your own work, reviewing a coauthor's data preparation, or assessing the data quality in a paper you are refereeing. used in 10 templates · 1 published study · loaded by 1 specialist · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Domain plausibility reviewreview You read the study as an expert of its field would: are the numbers and the patterns plausible for what is being measured? The pipeline already checks that every number in the paper traces to the results files; you check whether those numbers make sense in the world. used in 5 templates · loaded by 1 specialist · Examples: 1 example study No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Methods review (any discipline)review You review whether the study's methods answer its question and whether its results follow from them. The study may be from any field: astronomy, earth science, geography, health, literature, economics. used in 6 templates · loaded by 1 specialist · Examples: 1 example study No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Referee Simulationreview You are simulating a rigorous peer reviewer for a top academic journal in information systems, economics, or finance (e.g., MIS Quarterly, Management Science, Journal of Finance, RFS). used in 9 templates · 1 published study · loaded by 3 specialists · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Reference Checkreview Validate that every citation in a research paper draft can be traced to a concrete source — either in the project bibliography, the knowledge base, or an external database (CrossRef). Flag missing references so they can be retrieved before submission. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Technical Reviewreview This skill describes how to conduct a technical/methodological review of a research paper, focusing on the internal coherence of the data-to-results pipeline. Unlike a referee report (which evaluates contribution and positioning), the technical review asks: does the implementation actually do what the paper claims it does? used in 9 templates · 1 published study · loaded by 2 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Academic Writing Review Checklistreview Good academic writing in economics is clear, precise, and efficient. It serves the argument -- it does not draw attention to itself. The goal is to communicate complex ideas so that a busy reader (a referee with 30 papers on their desk) can follow your logic without rereading sentences. used in 10 templates · 1 published study · loaded by 1 specialist · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Synthesis Worker — Context Builder Modesynthesis You are operating in **context builder mode**. Your job is NOT to produce final deliverables. Instead, you consolidate all prior worker outputs into a structured research brief that will be passed as input to the specialist that writes the deliverable (for example, the paper drafter). used in 10 templates · 1 published study · loaded by 3 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Synthesis Worker — Consolidated Deliverablessynthesis You are a synthesis worker. Your job is to take ALL prior worker outputs for a work item and produce **3-5 clean, consolidated deliverables** that the principal can review without reading 30+ intermediary files. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Main Path Analysis for Mapping a Research Fieldsynthesis How to map a research field from its citation network: choose the boundary of the field, build the network of citations inside it, weight each citation by how many citation chains run through it, follow the heaviest chain (the main path) and its neighbours (key routes), test the result on other boundaries, and draw it by year in lanes named as questions. used in 1 template · loaded by 3 specialists No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Replication Packagesynthesis You are producing the replication materials that allow any researcher to reproduce every quantitative result in the paper from the raw data. used in 8 templates · 1 published study · loaded by 1 specialist · Examples: 7 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Writing Abstracts for Economics Paperswriting The abstract is the single most-read part of any paper. It determines whether a referee agrees to review, whether a colleague reads further, and how your paper is indexed and discovered. In roughly 150 words (100--200 depending on the journal), you must convey the full arc of the paper: what question you ask, why it matters, how you answer it, what you find, and why anyone should care. 1 published study · loaded by 1 specialist No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Citing Numbers by JSON Source Keywriting Every numeric value you put in a paper — in the abstract, in body text, in a table cell, in a figure caption — MUST trace back to a value in one of the workspace's machine-readable JSON sidecars. used in 10 templates · 1 published study · loaded by 7 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Discussion Sectionwriting The Discussion section **interprets** results — it does not restate them. It connects findings to theory, prior literature, and practice, then honestly addresses limitations and future directions. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Paper Structure for Empirical Researchwriting template's method sources (marked [method source] in the citable references). Cite only the methods the study used, not the whole list. used in 9 templates · 1 published study · loaded by 3 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Personal Academic Writing Stylewriting This skill captures the principal's academic writing voice as extracted from four published papers (BISE, IJRM, JMIS, ECIS 2025). Every draft you produce must match these patterns. used in 10 templates · 1 published study · loaded by 6 specialists · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Paper Revision Workflowwriting Guide the systematic revision of a manuscript in response to reviewer reports and an editor's decision letter. This skill covers the full workflow from reading reports to producing a revised manuscript with point-by-point responses. No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
Scoped Revision — what the targeted corrections step writeswriting You are the specialist for targeted corrections (the step listed as "Targeted corrections"). Your job is to address a specific list of `Finding` objects by emitting a structured patch file: `paper_draft.tex.edits.json`. A deterministic Python merger reads your patch file, validates it, and applies the edits to `paper_draft.tex`. used in 9 templates · 1 published study · loaded by 1 specialist · Examples: 8 example studies No evaluations yet e2er bundled skills·MIT·maintained by e2er authorsships with e2ersource
academic-paperdrafting 12-agent paper writing skill with Style Calibration, Writing Quality Check, LaTeX hardening, visualization, revision coaching, citation conversion, anti-leakage protocol, and VLM figure verification. No evaluations yet Academic Research Skills (ARS)·CC BY-NC 4.0·maintained by Edward Cheng-I Wue2er skills install academic-research-skillssource
academic-paper-reviewerreview 7-agent multi-perspective peer review with 0–100 quality rubrics (EIC + 3 dynamic reviewers + Devil's Advocate), concession threshold protocol, attack intensity preservation, optional cross-model DA critique/calibration, R&R traceability matrix. No evaluations yet Academic Research Skills (ARS)·CC BY-NC 4.0·maintained by Edward Cheng-I Wue2er skills install academic-research-skillssource
deep-researchliterature 13-agent research team with Socratic guided mode, PRISMA systematic review, intent detection, dialogue health monitoring, optional cross-model DA, Semantic Scholar API verification. No evaluations yet Academic Research Skills (ARS)·CC BY-NC 4.0·maintained by Edward Cheng-I Wue2er skills install academic-research-skillssource
academic-pipelinemeta Pipeline orchestrator that chains deep-research → academic-paper → academic-paper-reviewer with quality gates between stages. No evaluations yet Academic Research Skills (ARS)·CC BY-NC 4.0·maintained by Edward Cheng-I Wue2er skills install academic-research-skillssource
skill-creatormeta Meta-skill for building new skills from scratch No evaluations yet Anthropic Skills (foundational)·MIT·maintained by Anthropice2er skills install anthropic-skillssource
doc-coauthoringdrafting Long-document coauthoring workflow No evaluations yet Anthropic Skills (foundational)·MIT·maintained by Anthropice2er skills install anthropic-skillssource
docxdrafting Microsoft Word document generation No evaluations yet Anthropic Skills (foundational)·MIT·maintained by Anthropice2er skills install anthropic-skillssource
pdfdrafting PDF document generation No evaluations yet Anthropic Skills (foundational)·MIT·maintained by Anthropice2er skills install anthropic-skillssource
pptxslides PowerPoint deck generation No evaluations yet Anthropic Skills (foundational)·MIT·maintained by Anthropice2er skills install anthropic-skillssource
xlsxdata-handling Excel spreadsheet generation No evaluations yet Anthropic Skills (foundational)·MIT·maintained by Anthropice2er skills install anthropic-skillssource
mcp-buildermeta Build MCP servers (Anthropic spec) No evaluations yet Anthropic Skills (foundational)·MIT·maintained by Anthropice2er skills install anthropic-skillssource
claude-apiinfra Build apps with the Claude API + Anthropic SDK No evaluations yet Anthropic Skills (foundational)·MIT·maintained by Anthropice2er skills install anthropic-skillssource
ablation-plannerdesign No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
alphaxivliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
analyze-resultsanalysis No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
arxivliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
auto-paper-improvement-loopmeta No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
auto-review-loop-llmreview No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
auto-review-loop-minimaxreview No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
auto-review-loopreview No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
citation-auditaudit No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
claims-draftingaudit No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
comm-lit-reviewreview No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
deepxivliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
dse-loopdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
embodiment-descriptiondrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
exa-searchliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
experiment-auditaudit No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
experiment-bridgecode-gen No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
experiment-plandesign No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
experiment-queuecode-gen No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
feishu-notifyinfra No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
figure-descriptionfigures No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
figure-specfigures No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
formula-derivationmodeling No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
gemini-searchliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
grant-proposaldrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
idea-creatorideation No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
idea-discovery-robotideation No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
idea-discoveryideation No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
interview-cheatsheetdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
invention-structuringdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
jurisdiction-formatdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
kill-argumentdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
mermaid-diagramfigures No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
meta-optimizemeta No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
monitor-experimentdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
novelty-checkaudit No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
openalexliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
overleaf-syncsubmission No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
paper-claim-auditaudit No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
paper-compiledrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
paper-figurefigures No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
paper-illustration-image2drafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
paper-illustrationdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
paper-plandesign No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
paper-posterdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
paper-slidesslides No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
paper-talkslides No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
paper-writedrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
paper-writingdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
patent-novelty-checkaudit No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
patent-pipelinedrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
patent-reviewreview No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
pixel-artdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
prior-art-searchliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
proof-checkermodeling No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
proof-writermodeling No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
qzclidrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
rebuttalrevision No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
render-htmldrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
research-litliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
research-pipelineliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
research-refine-pipelineliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
research-refineliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
research-reviewreview No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
research-wikiliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
resubmit-pipelinesubmission No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
result-to-claimaudit No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
run-experimentdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
semantic-scholarliterature No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
serverless-modaldrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
shared-referencesdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
skills-codex-claude-reviewreview No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
skills-codex-gemini-reviewreview No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
skills-codexcode-gen No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
slides-polishslides No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
specification-writingdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
system-profiledrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
training-checkdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
vast-gpudrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
writing-systems-papersdrafting No evaluations yet ARIS skills·MIT·maintained by Yang, Ruofeng; Li, Yongcan; Li, Shuaie2er skills install arissource
auto-empirical-research-skillsinfra Root router for whole-repo installs — classifies an empirical-research request by stage/method and dispatches to one of the 1,094 vendored skills via catalog JSON lookups instead of reading the repo wholesale. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
StatsPAI_skillanalysis Full empirical/causal analysis in Python via the StatsPAI vertical engine — AER/QJE-style DID/RD/IV/SCM/DML pipeline with estimating equation + identifying assumption, Table 1/2, event-study figure, robustness gauntlet; plus epidemiology, ML-causal, and Oaxaca-style decomposition modes and Word/Excel/LaTeX table export. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
Full-empirical-analysis-skillanalysis Classical 8-step end-to-end empirical workflow in the traditional Python stack (pandas/statsmodels/linearmodels/pyfixest/econml) — cleaning through publication tables/figures in AER house style, with epidemiology and ML-causal parallel modes; the non-StatsPAI, estimator-explicit counterpart. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
Full-empirical-analysis-skill-Stataanalysis Same 8-step empirical pipeline as a reproducible Stata .do workflow — reghdfe/ivreg2/csdid/did_imputation/sdid/rdrobust/synth/psmatch2 estimation, bacondecomp/honestdid/rwolf/oster robustness, esttab/coefplot outputs; epidemiology and ML-causal modes included. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
Full-empirical-analysis-skill-Ranalysis Same 8-step empirical pipeline in the tidyverse + fixest R ecosystem — did/HonestDiD/rdrobust/gsynth/MatchIt/grf/DoubleML estimation with modelsummary/gt/ggplot2 publication outputs and Quarto reproducibility; epidemiology and ML-causal modes included. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
chinese-de-aigcediting Chinese academic de-AIGC rewriting targeting CNKI/Wanfang/VIP/Turnitin-zh detectors — a five-step locate/diagnose/rewrite/self-score/recheck loop over 17 diagnostic rules for the five structural signatures of Chinese LLM prose, with per-section strategies. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-workflowinfra Router for the 15-skill AER-skills collection — sequences manuscript work from topic selection through rebuttal for AER, AER:Insights, and AEJ journals; routes, does not replace, the specialized skills. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-topic-selectionideation Evaluates whether a research idea clears the AER top-5 bar, routes between AER, AER:Insights, and the AEJ family, and sharpens a fuzzy contribution sentence into one publishable claim. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-literatureliterature Positions a manuscript against the economics literature — antecedents map for the introduction, cite/no-cite decisions, and verification that every bibliography entry is real, correctly attributed, and cited to the published version. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-identificationdesign Selects, implements, or stress-tests the causal identification strategy — DID (incl. staggered), IV (incl. weak-IV-robust inference), RDD, synthetic control, shift-share/Bartik — before introduction or results are written. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-preregistrationdesign For primary-data and experimental projects, before the intervention: writes the pre-analysis plan, sizes the sample from a power calculation, and registers with the AEA RCT Registry. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-statspaianalysis Runs the AER-track analysis with StatsPAI — the agent-native Python engine and MCP server for causal inference, robustness, sensitivity, and publication-ready table export — after aer-identification fixes the design. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-robustnessanalysis Builds the robustness, heterogeneity, mechanism, and placebo battery AER referees demand, once main results exist and before the introduction's value-added paragraph is written. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-tables-figuresfigures Constructs and revises regression tables, descriptive-statistics tables, and figures in AER booktabs house style, with regression-table layout and figure-note conventions. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-paper-bodydrafting Drafts and revises the body sections of an AER/AEJ manuscript — background, data, empirical strategy, results, mechanisms, conclusion — including equation conventions, results-paragraph narration, magnitude interpretation, and back-of-envelope policy calculations. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-introductiondrafting Drafts or rewrites the introduction to the Keith Head / Bellemare five-paragraph formula with AER-specific conventions, and compresses abstracts to the mandatory 100-word limit. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-consistencyaudit Internal-consistency audit of a near-final manuscript: headline numbers across abstract/introduction/results/tables, sample sizes, log-point vs percentage-point conversions, cross-references, and citation-bibliography matching. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-referee-simreview Adversarial internal review before submission — simulates the AER desk screen plus three referee reports with calibrated severity, scores against the editorial rubric, and produces a prioritized revise list; rerun until the simulated verdict is at least major R&R. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-rebuttalrevision Handles a Revise & Resubmit from AER/AEJ journals — triage, the concede/clarify/push-back decision per comment, and the point-by-point response-letter format editors actually read, aligned with manuscript revisions. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-replicationreplication Assembles the AEA Data and Code Availability deposit — README writing and replication-package audit against the current AEA policy (including the February 2026 Data and Code Availability Policy) before the AEA Data Editor review. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
aer-submissionsubmission Final pre-submission audit for AER/AEJ journals — length, format, cover letter, per-author disclosure statements, file packaging, and routing among the AEA journal family. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
paper-workflowinfra Meta-orchestrator for a complete empirical paper (econ/social science): Stage 0-9 resumable pipeline from topic selection to submission with two hard human gates (Method Gate after estimation, Draft Quality Gate after polish); routes Python/StatsPAI, Stata, or R analysis backends and invokes existing skills rather than reimplementing them. Git submodule mirroring brycewang-stanford/Paper-WorkFlow. No evaluations yet Auto-Empirical Research Skills (AERS) — first-party skills·CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow)·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install auto-empirical-research-skillssource
a-evolvedrafting No evaluations yet AutoResearchClaw skills·MIT·maintained by Aiming Labe2er skills install autoresearchclawsource
biology-biopythondrafting No evaluations yet AutoResearchClaw skills·MIT·maintained by Aiming Labe2er skills install autoresearchclawsource
chemistry-rdkitdrafting No evaluations yet AutoResearchClaw skills·MIT·maintained by Aiming Labe2er skills install autoresearchclawsource
hypothesis-formulationideation No evaluations yet AutoResearchClaw skills·MIT·maintained by Aiming Labe2er skills install autoresearchclawsource
literature-searchliterature No evaluations yet AutoResearchClaw skills·MIT·maintained by Aiming Labe2er skills install autoresearchclawsource
researchclawliterature No evaluations yet AutoResearchClaw skills·MIT·maintained by Aiming Labe2er skills install autoresearchclawsource
scientific-visualizationfigures No evaluations yet AutoResearchClaw skills·MIT·maintained by Aiming Labe2er skills install autoresearchclawsource
scientific-writingdrafting No evaluations yet AutoResearchClaw skills·MIT·maintained by Aiming Labe2er skills install autoresearchclawsource
statistical-reportinganalysis No evaluations yet AutoResearchClaw skills·MIT·maintained by Aiming Labe2er skills install autoresearchclawsource
python-panel-dataanalysis Panel data analysis with Python using linearmodels and pandas. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
r-econometricsanalysis Run IV, DiD, and RDD analyses in R with proper diagnostics. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
stata-regressionanalysis Run regression analyses in Stata with publication-ready output tables. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
beamer-presentationslides Create academic presentations in Beamer with professional themes. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
econ-visualizationfigures Publication-quality charts and graphs for economics papers. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
api-data-fetcherdata-handling Fetch economic data from FRED, World Bank, and other APIs. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
stata-data-cleaningdata-handling Clean and transform messy data in Stata with reproducible workflows. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
code-simplifiercode-gen Streamlines and improves code clarity and consistency. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
commit-push-prinfra Manages git workflows: commits, pushes, and pull request creation. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
sdddesign Spec-driven development framework for structured feature creation. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
techdebtcode-gen Identifies and resolves code quality issues and maintenance concerns. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
research-ideationideation Generate research questions from economic phenomena. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
lit-review-assistantliterature Search, summarize, and synthesize economics literature. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
general-equilibrium-model-buildermodeling Constructs and solves Walrasian equilibrium models. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
latex-econ-modelmodeling Write and typeset economic models in LaTeX with proper notation. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
academic-paper-writerdrafting Draft economics papers with proper structure and academic style. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
latex-tablesdrafting Generate publication-ready regression tables in LaTeX. No evaluations yet awesome-econ-ai-stuff (Antonio Mele)·Other (see repo)·maintained by Antonio Melee2er skills install awesome-econ-ai-stuffsource
rt-workflowinfra Sequences a manuscript across venues — which cross-journal toolkit skill to invoke next, from picking a target journal through execution, submission-readiness, simulated review, rebuttal, and the replication package. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
rt-journal-matchsubmission Answers "which journal should I send this to?" — profiles the paper, shortlists candidate venues across 185+ packs, and ranks them into reach/match/safe with a resubmission ladder, reading live venue facts from each pack's source-map. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
rt-execution-bridgeanalysis Runs and audits the empirical analysis rather than just advising — maps a DiD/IV/RDD/synthetic-control/DML design to the concrete StatsPAI / Stata MCP tools in the environment and reports the fitted, audited number. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
rt-submission-readinesssubmission Venue-parameterized go/no-go scorecard on the actual manuscript — fit, identification, robustness, exhibits, exposition, venue mechanics, data/code, pre-empted objections — returning PASS/FLAG/FAIL per dimension plus desk-reject risk. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
rt-simulated-refereereview Pre-submission peer-review rehearsal — a calibrated Associate Editor desk-screen plus 2-3 distinct-lens referees for the target venue, adversarially verified and synthesized into a report, decision band, and prioritized skill-mapped fix list. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
rt-response-to-refereesrevision Turns a referee report into a point-by-point response letter plus revision plan — editor first, every comment answered, each empirical fix backed by a real re-run via the target pack's skill and the execution bridge. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
rt-replication-packagereplication Assembles and validates the Data-Editor replication package against the target venue's data-and-code policy — master script, pinned environment, README/roadmap, restricted-data plan, script-to-exhibit output map, and a Data-Editor-grade checklist. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-workflowinfra Router for the QJE pack — sequences manuscript work from topic selection through rebuttal for a Quarterly Journal of Economics submission; routes, does not replace, the specialized qje-* skills. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-topic-selectionideation Scopes and pressure-tests a research question for QJE — fit, the "big idea" bar, and breadth of the takeaway for QJE's general-interest readership. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-identificationdesign Stress-tests the causal identification strategy (RCT, staggered DID, IV, RDD, event study) against the QJE general-interest bar — including the journal-specific credibility ranking and the "novel dataset answering a first-order question" exception — before tables are drafted. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-theory-modelmodeling Adds the model or conceptual framework that turns a credible empirical coefficient into a lesson with broad implications — the frame QJE expects around a headline result. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-literature-positioningliterature Stakes the manuscript's contribution against the frontier — what it builds on, what it overturns, and why it belongs in a general-interest journal; positions the contribution rather than writing a full survey. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-robustnessanalysis Plans and prioritizes the robustness suite and online appendix QJE referees expect, exploiting the journal's no-page-limit norm, without changing the core identification design. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-tables-figuresfigures Finalizes main exhibits for a figure-forward QJE manuscript — clean tables and self-contained notes that read well in QJE's single-PDF, author-date format. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-writing-styleediting Polishes prose, abstract, and introduction so the big idea lands fast for a general-interest reader, reflecting QJE's house style of long, ambitious, narrative-driven empirical papers. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-referee-strategyreview War-games likely referee objections before submitting, to close gaps pre-emptively given QJE's ~2-week desk screen and ~1-4% acceptance rate; anticipates reports rather than writing the post-decision response. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-replication-packagereplication Builds the reproducible data-and-code deposit required for accepted empirical papers under QJE's data-availability policy. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-submissionsubmission Final pre-submission preflight for QJE via Editorial Express — single-PDF format, double-blind anonymization, author-date references, the no-fee policy, and supplementary files. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
qje-rebuttalrevision Structures the revision and response letter when a QJE decision letter arrives (R&R or reject-and-resubmit); routes re-analysis to the relevant qje-* skill rather than redoing it. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
ecta-workflowinfra Router for the 12-skill Econometrica depth pack (ecta-*) — topic selection through rebuttal, with the pack's theory-model and identification skills tuned to Econometrica's formal bar. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
jpe-workflowinfra Router for the 12-skill Journal of Political Economy depth pack (jpe-*) — topic selection through rebuttal for a JPE manuscript. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
restud-workflowinfra Router for the 12-skill Review of Economic Studies depth pack (restud-*) — topic selection through rebuttal, weighing design-based and structural identification on REStud's equal terms. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
mgsci-workflowinfra Router for the 12-skill Management Science depth pack (mgsci-*) — topic selection through rebuttal, including picking the right INFORMS Department lane (analytical vs empirical). No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
misq-workflowinfra Router for the 12-skill MIS Quarterly depth pack (misq-*) — topic selection through revision, first naming which of the four IS research traditions (behavioral, design science, economics, organizational) the paper lives in. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
american-economic-reviewsubmission Venue-fit skill for AER from the English Social-Science Journal bundle — fit, framing, the method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics; exemplar of the one-skill-per-journal breadth-bundle format. No evaluations yet Awesome Journal Skills (AJS)·MIT·maintained by Bryce Wang (Stanford REAP / CoPaper.AI)e2er skills install awesome-journal-skillssource
/announcement-digestliterature Triage and digest announcements / newsletters / Slack-equivalent feeds No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/checkininfra Daily check-in / status update with Claude No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/councilideation Convene a multi-perspective 'council' on an open question No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/deep-researchliterature Multi-agent deep research with paste-loop UX and subagent template No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/doneinfra Mark work complete + update tracking No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/dr-synthesizeliterature Synthesize results from a deep-research run No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/goals-reviewdesign Periodic review of personal/research goals No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/morning-briefinfra Daily morning briefing template No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/post-meetinginfra Post-meeting summary + action items No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/pre-meeting-briefinfra Pre-meeting brief generation No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/prompt-onlymeta Skill that only produces a prompt (no execution) No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/prompt-refinemeta Iteratively refine a prompt No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/promptmeta Build a prompt from scratch with formatting-core No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/proposal-reviserevision Revise an existing grant or research proposal No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/proposal-writedrafting Draft a grant or research proposal No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/review-planreview Review a research plan with structured feedback No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/schedule-queryinfra Query and reason about a calendar / schedule No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/setup-project-managementinfra Bootstrap a project-management workspace No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/tax-guideinfra Personal tax-related Q&A No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
/tips-bookmarksinfra Save and retrieve tips / bookmarks No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
agent:proposal-critic-agentreview Critic agent for grant/research proposals No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
agent:review-methodologyreview Methodology review agent No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
agent:review-writingediting Writing-quality review agent No evaluations yet claudeblattman (Chris Blattman)·MIT·maintained by Chris Blattman (University of Chicago, Harris School of Public Policy)e2er skills install claudeblattmansource
analyzeanalysis No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
carefuldrafting No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
checkpointdrafting No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
dashboarddrafting No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
discoverideation No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
freezedrafting No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
new-projectdrafting No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
reviewreview No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
revisedrafting No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
strategizedrafting No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
submitsubmission No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
talkslides No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
toolsdrafting No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
writedrafting No evaluations yet Clo-Author skills·none declared·maintained by Hugo Sant'Anna (UAB Economics)e2er skills install clo-authorsource
/econ-reviewreview Referee-grade review of an economics paper: reconstructs claims and evidence before judging, runs exhaustive parallel audit passes (identification, inference, proofs, tables, figures, numbers, literature frontier, writing), challenges and verifies every surviving comment, and delivers a typeset referee report plus prioritized fix plan — never rewrites the paper. No evaluations yet Econ Research Skills (Hanlu Long)·PolyForm-Noncommercial-1.0.0 (econ-review); MIT (econ-slides, econ-write)·maintained by Hanlu Long (hanlulong on GitHub; also maintains awesome-ai-for-economists)e2er skills install econ-research-skillssource
/econ-review-setupinfra Prepares, verifies, repairs, or removes the user-owned Python runtime and local Review Desk behind an installed econ-review plugin — dry-run shown first, no silent package downloads or system-software installs. No evaluations yet Econ Research Skills (Hanlu Long)·PolyForm-Noncommercial-1.0.0 (econ-review); MIT (econ-slides, econ-write)·maintained by Hanlu Long (hanlulong on GitHub; also maintains awesome-ai-for-economists)e2er skills install econ-research-skillssource
/econ-slidesslides Turns an economics paper into a compiled LaTeX/Beamer talk (conference, seminar, job-market, discussant) with strict number provenance, slide-table surgery, timed speaker scripts, and mandatory rendered-page inspection via bundled deck and script checkers. No evaluations yet Econ Research Skills (Hanlu Long)·PolyForm-Noncommercial-1.0.0 (econ-review); MIT (econ-slides, econ-write)·maintained by Hanlu Long (hanlulong on GitHub; also maintains awesome-ai-for-economists)e2er skills install econ-research-skillssource
/econ-writedrafting Writes and rewrites economics paper prose across every section and paper type, applying rules synthesized from 50+ guides (Cochrane, McCloskey, Shapiro, Head, Bellemare, Goldin, Kremer): reader-first triangular structure, one central contribution, concrete findings over vague previews; includes identification-strategy, LaTeX, and review-checklist references. No evaluations yet Econ Research Skills (Hanlu Long)·PolyForm-Noncommercial-1.0.0 (econ-review); MIT (econ-slides, econ-write)·maintained by Hanlu Long (hanlulong on GitHub; also maintains awesome-ai-for-economists)e2er skills install econ-research-skillssource
academic-slidesslides Academic slide deck generation No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
evo-memoryinfra Persistent memory layer for EvoScientist sessions No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
evomath-taomodeling Mathematical derivation skill in the spirit of Tao-style proof reasoning No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
experiment-craftcode-gen Experiment design and code crafting No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
experiment-iterative-codercode-gen Iterative coding loop for experimentation No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
experiment-pipelinecode-gen End-to-end experiment pipeline orchestration No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
nano-bananafigures AI-generated inline figures (Google Gemini Nano Banana) No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
paper-navigatorliterature Navigate literature with persistent memory No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
paper-planningdesign Paper structure + research plan No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
paper-rebuttalrevision Rebuttal pipeline for reviewer comments No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
paper-reviewreview Multi-perspective peer review No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
paper-writingdrafting Paper drafting pipeline No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
research-ideationideation Research idea generation No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
research-surveyliterature Survey/literature review generation No evaluations yet EvoSkills·Apache-2.0·maintained by EvoScientist teame2er skills install evoskillssource
design-science-researcherdesign No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
economistdesign No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
researcherdesign No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
judge-designsanalysis No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
natural-experimentsanalysis No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
sensitivityanalysis No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
shift-shareanalysis No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
weak-instrumentsanalysis No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
blockchaindata-handling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
cleaningdata-handling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
crypto-defidata-handling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
figure-specdata-handling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
fred-apidata-handling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
public-financedata-handling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
visualizationdata-handling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
didanalysis No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
event-study-financeanalysis 1 example study No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
iv-estimationanalysis No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
panel-dataanalysis No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
rddanalysis No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
time-seriesanalysis No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
beamerdrafting No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
bibtexdrafting No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
econ-modeldrafting No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
tablesdrafting No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
optimization-verificationmodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
proof-strategiesmodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
asset-pricingmodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
game-theorymodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
market-microstructuremodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
option-pricingmodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
portfolio-theorymodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
risk-managementmodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
term-structuremodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
idea-expansionideation No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
anti-slopaudit No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
argument-auditaudit No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
creative-ideationaudit No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
identification-strategyaudit No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
novelty-positioningaudit No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
comparison-evaluationreplication No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
paper-parsingreplication No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
replication-reportreplication No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
replication-strategyreplication No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
result-extractionreplication No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
beamerreview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
codereview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
conference-submissionreview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
consistency-checkreview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
constructive-feedbackreview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
datareview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
econometricsreview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
financereview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
latexreview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
referee-simulationreview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
reference-checkreview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
technical-reviewreview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
visual-formattingreview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
writingreview No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
context-builderliterature No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
deliverablesliterature No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
cartographermodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
evaluatormodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
phenomenologistmodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
scout_directormodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
synthesizermodeling No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
crowdsourcingmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
digital_innovationmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
digital_marketsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
digital_transformationmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
is_strategymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
it_governancemodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
knowledge_managementmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
platform_economicsmodeling loaded by 1 specialist · Examples: 2 example studies No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
sociotechnicalmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
technology_acceptancemodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
auction_theorymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
behavioral_economicsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
contract_theorymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
development_economicsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
environmental_economicsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
financial_economicsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
game_theorymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
industrial_organizationmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
labor_economicsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
mechanism_designmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
network_economicsmodeling loaded by 1 specialist · Examples: 2 example studies No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
public_economicsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
category_theorymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
combinatoricsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
dynamical_systemsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
graph_theorymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
information_theorymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
measure_theorymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
optimizationmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
probability_theorymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
topologymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
complexitymodeling loaded by 1 specialist · Examples: 1 example study No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
fluid_dynamicsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
network_physicsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
quantum_informationmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
statistical_mechanicsmodeling loaded by 1 specialist · Examples: 1 example study No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
thermodynamicsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
ecologymodeling loaded by 1 specialist · Examples: 1 example study No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
epidemiologymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
evolutionary_biologymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
neurosciencemodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
computational_complexitymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
cryptographymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
distributed_systemsmodeling loaded by 1 specialist · Examples: 1 example study No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
formal_verificationmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
machine_learning_theorymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
anthropologymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
design_theorymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
linguisticsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
media_studiesmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
organizational_theorymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
philosophy_of_sciencemodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
political_sciencemodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
psychologymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
rhetoricmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
science_technology_studiesmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
sociologymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
intellectual_propertymodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
law_economicsmodeling loaded by 1 specialist No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
regulatory_theorymodeling loaded by 1 specialist · Examples: 1 example study No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
abstractdrafting No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
discussiondrafting No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
extended-abstractdrafting No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
paper-structuredrafting No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
personal-styledrafting No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
referee-responsedrafting No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
revisiondrafting No evaluations yet 100xOS shared skills·private (curator-owned)·maintained by Björn Hannekeprivate pack
prose-revision-skill-ht-anthony-lee-zhangediting Revise draft prose by finding the best structure for the ideas already there — idea flow first, linguistic flow second; preserve voice and claim strength; distinct from proofreading. No evaluations yet Prose Revision (h/t Anthony Lee Zhang)·MIT·maintained by Gabberflast (GitHub)e2er skills install prose-revisionsource
/audit-reproducibilityreplication No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/checkpointinfra No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/commitinfra No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/compile-latexdrafting No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/context-statusinfra No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/create-lectureslides No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/data-analysisanalysis No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/deep-auditaudit No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/deploysubmission No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/devils-advocatereview No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/extract-tikzfigures No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/interview-meideation No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/learninfra No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/lit-reviewliterature No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/new-diagramfigures No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/pedagogy-reviewediting No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/permission-checkinfra No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/preregisterdesign No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/proofreadediting No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/qa-quartoaudit No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/research-ideationideation No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/respond-to-refereesrevision No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/review-paperreview No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/review-rreview No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/seven-pass-reviewreview No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/slide-excellenceslides No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/translate-to-quartodrafting No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/validate-bibaudit No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/verify-claimsaudit No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
/visual-auditfigures No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:beamer-translatordrafting No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:claim-verifieraudit No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:domain-refereereview No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:domain-reviewerreview No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:editorreview No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:methods-refereereview No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:pedagogy-reviewerediting No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:proofreaderediting No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:quarto-criticaudit No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:quarto-fixerediting No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:r-reviewerreview No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:slide-auditorreview No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:tikz-reviewerreview No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
agent:verifieraudit No evaluations yet Pedro Sant'Anna's Claude Code Workflow·MIT·maintained by Pedro H. C. Sant'Anna (Emory University, Economics)e2er skills install psantanna-workflowsource
research-paper-writingdrafting Draft or rewrite ML/CV/NLP paper sections into reviewer-friendly form via section-specific template guides, paragraph-by-paragraph rewriting with reverse outlining, claim-evidence mapping, and an adversarial five-dimension self-review before submission. No evaluations yet Research Paper Writing Skills·MIT·maintained by Master-cai (GitHub)e2er skills install research-paper-writing-skillssource
/math-proofmodeling Single-pass discipline for full, gap-free proofs: state what you will show before showing it, sign every term, no "clearly", no overgeneralizing from examples. No evaluations yet Theorist Toolbox·MIT·maintained by Moran Koren (Ben-Gurion University of the Negev, Economics)e2er skills install theorist-toolboxsource
/codex-mathaudit Drives OpenAI Codex as an adversarial mathematical co-processor — verify, write, and explore modes; every output is a lead, not a verdict. No evaluations yet Theorist Toolbox·MIT·maintained by Moran Koren (Ben-Gurion University of the Negev, Economics)e2er skills install theorist-toolboxsource
/co-math-initinfra Scaffolds a structured proof-building project (paper.tex, goals, decisions log, workstreams) with strict mode: every gap flagged unproven, nothing complete without reviewer sign-off. No evaluations yet Theorist Toolbox·MIT·maintained by Moran Koren (Ben-Gurion University of the Negev, Economics)e2er skills install theorist-toolboxsource
/co-math-statusinfra Renders a compact status view of a co-math project — goals, active workstreams, blocked items, pending reviews, recent decisions — as an ASCII diagram. No evaluations yet Theorist Toolbox·MIT·maintained by Moran Koren (Ben-Gurion University of the Negev, Economics)e2er skills install theorist-toolboxsource
/proof-readabilityediting Post-verification exposition pass for already-verified proofs — six layers (architecture, signposting, justification, notation, intuition, grammar) without changing the mathematics. No evaluations yet Theorist Toolbox·MIT·maintained by Moran Koren (Ben-Gurion University of the Negev, Economics)e2er skills install theorist-toolboxsource
agent:project-coordinatorinfra Front door of a co-math project — reads goals.md, formalises research intent, dispatches and steers workstreams, filters low-level chatter from the user. No evaluations yet Theorist Toolbox·MIT·maintained by Moran Koren (Ben-Gurion University of the Negev, Economics)e2er skills install theorist-toolboxsource
agent:literature-reviewerliterature Literature searches and verified, cited workstream reports; confirms prior art and validates supporting citations for claims in paper.tex. No evaluations yet Theorist Toolbox·MIT·maintained by Moran Koren (Ben-Gurion University of the Negev, Economics)e2er skills install theorist-toolboxsource
agent:provermodeling Drafts proofs into paper.tex with strict discipline — every step justified, cited, or explicitly marked unproven; never hand-waves. No evaluations yet Theorist Toolbox·MIT·maintained by Moran Koren (Ben-Gurion University of the Negev, Economics)e2er skills install theorist-toolboxsource
agent:codercode-gen Python for computational exploration and numerical verification, with mandatory tests and golden values; cannot complete until tests pass and a reviewer accepts. No evaluations yet Theorist Toolbox·MIT·maintained by Moran Koren (Ben-Gurion University of the Negev, Economics)e2er skills install theorist-toolboxsource
agent:lean-proveraudit Formalises a lemma in Lean 4 and verifies it with lake build — a green build is the strongest "proven" the system supports; the reviewer re-runs the build rather than re-checking the mathematics. No evaluations yet Theorist Toolbox·MIT·maintained by Moran Koren (Ben-Gurion University of the Negev, Economics)e2er skills install theorist-toolboxsource
agent:paper-reviewerreview Adversarial gate — a workstream cannot be marked complete until this agent writes an explicit approval file; cross-checks references, unproven blocks, and code-vs-claim consistency. No evaluations yet Theorist Toolbox·MIT·maintained by Moran Koren (Ben-Gurion University of the Negev, Economics)e2er skills install theorist-toolboxsource
skill-auditortop-level folder “A comprehensive auditor for any agent skill — including Manus, OpenClaw/ClawHub, Claude, LobeHub, or custom SKILL.md-based skills. Use this skill whenever a user wants to evaluate, audit, review, score, or quality-check an agent skill before publishing, updating, or deploying. Covers two hard veto gates (structural redlines + research integrity redlines), static quality scoring across 25 criteria (ISO 25010 + OpenSSF + Agent), dynamic test input generation, multi-mode execution testing, multi-layer output evaluation with five specialized category rubrics (Evidence Insight / Protocol Design / Data Analysis / Academic Writing / Other), a Research Veto that applies to all four research categories, human eval viewer generation, actionable P0/P1/P2 optimization recommendations, and automatic skill improvement that outputs a polished, production-ready SKILL.md. Also use whenever a user says "audit my skill", "evaluate my skill", "improve my skill", or wants a corrected version after evaluation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubsource
abstract-summarizerAcademic Writing “Transform lengthy academic papers into concise, structured 250-word abstracts.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
abstract-trimmerAcademic Writing “Precision editing tool that reduces abstract word count through intelligent compression techniques, maintaining scientific rigor while meeting strict journal and conference requirements.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
academic-abstract-refinerAcademic Writing “Refines long medical academic texts into SCI-style unstructured Chinese and English abstracts; use when you need to condense drafts/reports/summaries into bilingual abstracts and generate Summary_Report.md.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
academic-highlight-generatorAcademic Writing “Generates submission-ready Elsevier/SCI Highlights from manuscript text or extracted PDF/DOCX/TXT content. Use when a user needs 3-5 concise, evidence-grounded highlight bullets for a research paper, review, meta-analysis, case report, or bioinformatics manuscript.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
adverse-event-narrativeAcademic Writing “Generates CIOMS I-compliant ICSR narratives from adverse event case data for FDA and EMA regulatory submission. Includes temporal analysis, MedDRA coding, causality assessment using WHO-UMC or Naranjo criteria, and multi-format output.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
anatomy-quiz-masterAcademic Writing “Generate interactive anatomy quizzes for medical education with multiple.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
anki-card-creatorAcademic Writing “Use anki-card-creator for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries for study-card generation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
arxiv-preflightAcademic Writing “Run a submission-readiness preflight on a manuscript before arXiv upload. Use when the user is preparing an arXiv submission, asks to check a paper before uploading, mentions hallucinated or fake references, leftover LLM meta-comments / prompts in text, placeholder data (TODO, TBD, XX%), AI-use disclosure, scholarly integrity, research integrity, or arXiv moderation risk — even if they don't say "preflight". Also trigger on phrases like "check my paper before arXiv", "verify my references", "scan for AI artifacts", "scan for LLM residue", "is my submission ready", or "review .tex/.bib before submit".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
author-response-builderAcademic Writing “Turns reviewer comments into structured, professional point-by-point responses linked to manuscript revisions, clarifications, rebuttals, and additional analyses.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
authorship-credit-genAcademic Writing “Use when determining author order on research manuscripts, assigning CRediT contributor roles for transparency, documenting individual contributions to collaborative projects, or resolving authorship disputes in multi-institutional research. Generates fair and transparent auth...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
automated-soap-note-generatorAcademic Writing “Generate structured SOAP notes from clinical narratives, transcripts, or existing notes; use when the user needs de-identified clinical documentation organized into Subjective, Objective, Assessment, and Plan sections, with clear assumptions and review points.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biomed-outline-generatorAcademic Writing “Generates structured biomedical outlines for review articles, discussion sections, and thesis proposals. Use when a user provides biomedical keywords, results/discussion text, or a proposal title plus background and needs a directly usable academic writing scaffold.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biotech-pitch-deck-narrativeAcademic Writing “Use biotech-pitch-deck-narrative for academic writing workflows that need structured investor-facing storytelling, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
blind-review-sanitizerAcademic Writing “Use blind-review-sanitizer for academic writing workflows that need structured anonymization, explicit assumptions, and clear output boundaries for double-blind submission.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
citation-formatterAcademic Writing “Use when formatting references for journal submission, converting between citation styles (APA, MLA, Vancouver, Chicago), generating bibliographies for manuscripts, or ensuring consistent reference formatting. Automatically formats citations and bibliographies in 1000+ academi...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
claim-strength-calibratorAcademic Writing “Calibrates manuscript claim strength so wording matches the actual evidence level, study design, and validation status.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinical-decision-supportAcademic Writing “Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). ...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
conference-abstract-adaptorAcademic Writing “Adapt scientific abstracts to conference-specific word limits, section rules, and formatting constraints; use when reshaping an existing abstract for submission.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
conference-abstract-writerAcademic Writing “Condenses a full study into conference-submission abstract format. Use when adapting a manuscript abstract or study summary to meet a specific conference's word limit, structured format (Background/Methods/Results/Conclusion), character limits, or required section headings. Also triggers on "adapt my abstract for [conference]", "shorten my abstract to 250 words", "reformat for ASCO/ASGCT/SfN/AACR", "I need a conference abstract", or "cut my abstract to fit the word limit".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
conference-poster-pitchAcademic Writing “Use conference poster pitch for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
consistency-checker-across-manuscriptAcademic Writing “Checks consistency across title, abstract, methods, results, figures, tables, and supplements to identify internal contradictions and version drift in biomedical manuscripts.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cover-letter-drafterAcademic Writing “Drafts journal-ready cover letters for manuscript submission. Use when preparing a submission package, communicating the manuscript's contributions and journal fit to editors, or tailoring the novelty framing for a specific journal's scope. Also triggers on "write a cover letter for my paper", "draft a submission cover letter", "help me write to the editor", or "cover letter for [journal name]".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cover-letter-drafterAcademic Writing “Generates professional cover letters for journal submissions and job.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cover-letter-generatorAcademic Writing “Generates a journal-ready cover letter from manuscript metadata, highlights, and journal-fit notes. Use when preparing an academic submission package and you need editor-facing language that clearly states novelty, relevance, declarations, and corresponding-author details.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
dei-statement-drafterAcademic Writing “Draft Diversity, Equity, and Inclusion statements for academic applications.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
digital-twin-discharge-drafterAcademic Writing “Use when drafting patient discharge summaries, creating personalized discharge instructions, simulating post-discharge outcomes, reducing hospital readmissions, or optimizing care transitions. Generates AI-enhanced discharge documentation with digital twin predictions for improved patient safety.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
discharge-summary-writerAcademic Writing “Generate hospital discharge summaries from admission data, hospital course, diagnoses, procedures, and follow-up plans; use when a structured discharge document is required from clinical notes.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
discussion-composerAcademic Writing “Composes a Discussion around key findings, mechanisms, clinical relevance, and limitations. Use when writing or improving a Discussion section for any biomedical manuscript — including interpreting results, connecting to prior literature, addressing unexpected findings, framing limitations, and writing the conclusion. Also triggers on "write my discussion", "help me discuss my findings", "how do I compare to prior studies", "write the limitations paragraph", or "draft a discussion for my paper".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
discussion-section-architectAcademic Writing “Structures and writes discussion sections for academic papers and research reports. Use when writing a discussion section, interpreting research results, connecting findings to existing literature, addressing study limitations, synthesizing conclusions, or drafting any part of...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
ectd-xml-compilerAcademic Writing “Automatically convert uploaded drug application documents (Word/PDF) into XML skeleton structure compliant with eCTD 4.0/3.2.2 specifications.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
ehr-semantic-compressorAcademic Writing “1. Confirm the user objective, required inputs, and non-negotiable constraints before doing detailed work. 2. Validate that the request matches the documented scope and stop early if the task would require unsupported as.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
faq-generatorAcademic Writing “Generates FAQ lists from complex medical policies or protocols. Trigger when user provides medical documents, policies, or protocols and requests FAQ generation, patient education materials, or simplified explanations.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
figure-legend-genAcademic Writing “Generate standardized figure legends for scientific figures and charts; use when preparing publication-ready legends that summarize design, variables, sample size, and key statistical notes.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
figure-legend-writerAcademic Writing “Writes complete, publication-grade figure legends that can stand on their own. Use when writing or revising figure legends for any scientific figure — bar charts, line graphs, scatter plots, box plots, heatmaps, survival curves, flow cytometry plots, western blots, microscopy images, or schematic diagrams. Also triggers on "write a figure legend for", "help me describe this figure", "my figure needs a legend", "write Figure 1 legend", or "what should a figure legend include".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
figure-reference-checkerAcademic Writing “Use figure reference checker for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
find-paper-referencesAcademic Writing “Automatically find references for academic paper Markdown files. Reads full paper text, identifies each knowledge point requiring citation (epidemiological data, mechanism descriptions, existing research conclusions, etc.), searches PubMed for 3-5 most relevant articles per kn...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
grant-budget-justificationAcademic Writing “Use grant budget justification for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
grant-mock-reviewerAcademic Writing “Simulate structured grant peer review for biomedical proposals; use when stress-testing significance, innovation, approach, feasibility, and reviewer-facing weaknesses before submission.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
grant-proposal-assistantAcademic Writing “Assist with biomedical grant proposal drafting, structure, and revision; use when preparing fundable proposal sections, aligning aims and methods, or improving reviewer-facing clarity.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
grant-specific-aims-writerAcademic Writing “Writes Specific Aims pages for grant applications. Use when drafting or revising the Specific Aims page (NIH R01/R21/R03), NSF Project Summary, or equivalent for any major funding agency. Also triggers on "write my specific aims", "help me draft specific aims for NIH", "what should a specific aims page include", "NSF project summary", "write my grant aims", or "how do I structure an R01".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
graph-interpretationAcademic Writing “Use when interpreting scientific graphs and charts, explaining data visualizations for research presentations, writing figure captions for publications, or analyzing trends in clinical research data. Converts complex visual data into clear, accurate explanations for academic papers, clinical reports, and public presentations.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
graphical-abstract-generatorAcademic Writing “Converts a biomedical study storyline into a graphical abstract and, when direct image capability is available, generates the graphical abstract directly; otherwise it falls back to prompts, Mermaid flowcharts, or designer-facing briefs.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
hipaa-compliance-auditorAcademic Writing “Clinical-grade PII/PHI detection and de-identification for healthcare text data. Scans all 18 HIPAA identifier categories with confidence scoring, generates audit logs, supports custom regex patterns, and produces de-identified output while preserving document structure.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
iacuc-protocol-drafterAcademic Writing “Draft IACUC protocol applications with focus on the 3Rs principles justification.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
introduction-logic-builderAcademic Writing “Builds background-gap-objective logic for biomedical manuscript introductions with clear study positioning and disciplined narrative structure.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
introduction-section-writerAcademic Writing “Writes the full Introduction section of a biomedical manuscript based on an approved or sufficiently clear study logic, while preserving evidence boundaries and introduction discipline.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
irb-application-assistantAcademic Writing “Assists researchers with Institutional Review Board (IRB) application tasks, including drafting informed consent documents, reviewing research protocols for compliance, generating application forms, and preparing submission checklists. Use when the user mentions IRB, Instituti...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
journal-club-presenterAcademic Writing “Generate journal club slides with background, critique, and discussion.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
journal-cover-prompterAcademic Writing “Use when creating journal cover images, generating scientific artwork prompts, or designing graphical abstracts. Creates detailed prompts for AI image generators to produce publication-quality scientific visuals.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
labarchive-integrationAcademic Writing “Converts LabArchives notebook data, entry metadata, and authorized ELN exports into manuscript-ready academic writing outputs such as Methods sections, data-availability statements, reproducibility appendices, experiment timelines, and submission support notes. Optional bundled scripts can be used to collect or validate source notebook data before writing.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
latex-manuscript-format-converterAcademic Writing “Converts existing manuscript content into LaTeX format aligned with a target journal, conference, or template while preserving manuscript meaning and structural integrity.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
latex-postersAcademic Writing “Creates academic-poster writing packages for LaTeX using beamerposter, tikzposter, or baposter. Use when a user needs poster-ready section copy, figure plans, captions, and package-specific layout decisions for conference or thesis posters.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
lay-press-release-writerAcademic Writing “Transform academic papers into university press releases for general.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
lay-summary-for-cross-disciplinary-teamsAcademic Writing “Rewrites technical research content into a structured lay summary that cross-disciplinary teams can quickly understand and act on. Use when the user wants to explain research to colleagues outside their specialty — clinicians, wet-lab scientists, bioinformaticians, product managers, or leadership. Trigger on: "lay summary", "explain my research to the team", "non-technical summary", "cross-disciplinary summary", "translate my findings", "align our team on the study", or any request to communicate research goals, findings, or next steps to a mixed or non-specialist audience. Part of the AIPOCH Academic Writing skill hub. Sits midstream: after research content is clarified, before downstream deliverables like slide decks or graphical abstracts.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
lay-summary-genAcademic Writing “Converts complex medical abstracts into plain language summaries for.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
limitation-and-risk-writerAcademic Writing “Acknowledges limitations in sample, design, measurement, and validation in a professional way that improves credibility without undermining the whole paper. Use when writing the limitations paragraph of a Discussion section, preparing a grant risk assessment, responding to reviewers about study weaknesses, or framing scope boundaries for a paper. Also triggers on "write my limitations", "how should I address the limitation of", "reviewer said my sample is too small", or "help me word this limitation".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
linkedin-optimizerAcademic Writing “Use when optimizing LinkedIn profiles for doctors, physicians, nurses, healthcare professionals, or medical researchers. Crafts compelling headlines, writes professional summaries, integrates healthcare keywords, and builds personal branding for medical careers.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
literature-reviewAcademic Writing “Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
market-access-valueAcademic Writing “Use market access value for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-cv-resume-builderAcademic Writing “Use medical cv resume builder for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-device-mdr-auditorAcademic Writing “Audit medical device technical files against EU MDR 2017/745 regulations.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-email-polisherAcademic Writing “Transforms rough email drafts into polished, professional medical correspondence.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-english-precision-editorAcademic Writing “Improves medical English precision without changing the underlying facts, evidence boundaries, or intended scientific meaning.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-imaging-reviewAcademic Writing “Write comprehensive literature reviews for medical imaging AI research. Use when writing survey papers, systematic reviews, or literature analyses on topics like segmentation, detection, classification in CT, MRI, X-ray, ultrasound, or pathology imaging. Triggers on requests f...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-review-writer-architectAcademic Writing “A multi-stage workflow for writing long-form medical reviews; used when the user needs to build an outline based on PubMed literature, write chapter by chapter, perform supplementary searches, and format citations; input is the review topic and project directory, output is a c...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-scribe-dictationAcademic Writing “Convert physician verbal dictation into structured SOAP notes. Trigger.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-translationAcademic Writing “Use medical translation for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medication-adherence-message-genAcademic Writing “Use medication adherence message gen for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meeting-minutesAcademic Writing “Use meeting minutes for other workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-analysis-methods-generatorAcademic Writing “Generates the Methods section for a meta-analysis paper, including search strategy, screening, quality assessment, data extraction, and statistical analysis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-baseline-generatorAcademic Writing “Generates a meta-analysis baseline characteristics section (text + table) from raw data. Supports Chinese and English. Use when the user provides baseline data and wants a formatted results section.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-manuscript-generatorAcademic Writing “Generates a first draft of a clinical meta-analysis paper. Input the research report (including Methods and Results sections), language, and title to automatically generate a complete paper draft including Abstract, Introduction, Discussion, and other sections, with automatic ...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-results-forest-plot-analyzerAcademic Writing “Analyzes forest plots for meta-analysis, generating detailed descriptions and formatting figure legends in Chinese or English. Use when the user wants to interpret a forest plot image, describe its statistical significance (heterogeneity, p-value), and format the output with s...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-results-funnel-plot-generatorAcademic Writing “Generates a Meta-analysis results section description for funnel plots, including statistical tables (Egger's, Begg's, Trim & Fill) and figure legends. Supports English and Chinese outputs. Use when user provides a funnel plot image and statistics and wants a formatted report.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-results-risk-of-biasAcademic Writing “Generates the "Risk of Bias" results section for a meta-analysis based on assessment tables and statistics. Use when the user wants to draft the risk of bias analysis text from provided data tables.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-results-sensitivity-analysisAcademic Writing “Generates the "Results" section for meta-analysis sensitivity analysis based on statistical tables and titles. Use when the user wants to describe sensitivity analysis results or format sensitivity tables for a meta-analysis paper.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
method-writingAcademic Writing “Write and revise the Methods section of research papers to ensure reproducibility; use when preparing an IMRAD manuscript or responding to journal/reporting-guideline requirements (e.g., CONSORT/STROBE/PRISMA).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
methods-section-writerAcademic Writing “Turns your protocol and analysis workflow into publication-ready Methods text. Use when writing or revising the Methods section of a biomedical manuscript, ensuring it complies with reporting guidelines (CONSORT, STROBE, PRISMA, TRIPOD), matches what is in the Results section, and satisfies journal-specific word limits and declarations. Also triggers on "write my methods", "revise my methods section", "how to report my statistics", "what do I need to include in methods for [study type]", or "make my methods CONSORT-compliant".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
microbiome-diversity-reporterAcademic Writing “Interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
moa-explainerAcademic Writing “Generate 3D animation scripts and lay explanations for drug mechanisms.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
molecular-review-workflowAcademic Writing “Generates academic reviews for molecules in diseases using PubMed research. Invoke when user needs biomedical literature review with Vancouver citation format.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
networking-email-drafterAcademic Writing “Draft professional follow-up emails to contacts made at conferences - not too pushy, but memorable.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
nih-biosketch-builderAcademic Writing “Generate NIH Biosketch documents compliant with the 2022 OMB-approved.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
nsfc-grant-writerAcademic Writing “Generate a complete NSFC (National Natural Science Foundation of China) General Program grant application in Chinese, following the 2026 official template. Use when the user provides a scientific hypothesis and wants to generate a full grant application document, including abs...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
paper-webAcademic Writing “Use this skill when converting academic papers to promotional and presentation formats, including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). This skill is suitable for paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing printable posters from LaTeX or PDF source.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
paper-sprint-reviewAcademic Writing “Scrum-inspired paper review, revision, and R&R workflow. Handles docx/tex/md/PDF in English or Chinese. Auto-detects manuscript stage, estimates sprint count, runs multi-lens review (Contribution/Rigor/Writing/Editor), generates prioritized revision backlog, exports MD/DOCX/PDF/HTML reports. Use when asked to review a paper, revise based on reviewer comments, handle R&R, respond to peer review, plan paper revision sprints, or when user types /ps or /papersprint.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
patent-assistantAcademic Writing “Assists R&D teams with patent technical disclosure drafting and patent/novelty search analysis; use when users ask to write a patent disclosure, structure an invention description, search related patents, or assess novelty.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
patient-recruitment-ad-genAcademic Writing “Generate ethical, compliant, and patient-friendly recruitment advertisements for clinical trials.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
peer-reviewAcademic Writing “Conduct professional peer reviews for papers or theses, providing structured evaluations and improvement suggestions; use when you need a pre-submission assessment, an internal review, or academic quality control.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
peer-review-response-drafterAcademic Writing “Assist in drafting professional peer review response letters. Trigger.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
personal-statementAcademic Writing “Use when writing medical school personal statements, residency application essays, fellowship statements, or graduate school admissions essays. Crafts compelling narratives highlighting clinical experiences, research achievements, and career motivations for healthcare education applications.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
poster-layout-plannerAcademic Writing “Use poster layout planner for other workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
poster-storyline-builderAcademic Writing “Reorganizes a paper into a storyline suitable for scientific posters. Use when planning the section structure, title hierarchy, figure selection, and live-explanation flow for an academic conference poster. Also triggers on "help me design a poster layout", "what sections should my poster have", "how do I arrange my poster", "poster structure for [conference]", or "which figures should I use for my poster".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
presentation-hookAcademic Writing “Creates engaging opening statements and powerful closings for medical.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
prior-auth-letter-drafterAcademic Writing “Generate professional prior authorization request letters for insurance companies with proper clinical justification and formatting.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
q-and-a-prep-partnerAcademic Writing “Predict challenging questions for presentations and prepare structured responses.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
radiology-image-quizAcademic Writing “Use when creating radiology educational quizzes, preparing board exam questions, or studying medical imaging cases. Generates interactive quizzes with X-ray, CT, MRI, and ultrasound images for medical education.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
rebuttal-letter-strategistAcademic Writing “Use rebuttal letter strategist for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
recommendation-letter-assistantAcademic Writing “Helps faculty and mentors draft standardized recommendation letters for.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
reference-integrity-checkerAcademic Writing “Checks whether manuscript references are accurately matched to claims, appropriately scoped, and not overextended, misquoted, or second-hand cited.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
reference-style-syncAcademic Writing “One-click synchronization and standardization of reference formats in literature management tools, intelligently fixing metadata errors.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
referral-letter-generatorAcademic Writing “Generate medical referral letters with patient summary, reason for referral, key findings, and requested next steps; use when transferring care or communicating with another clinician or department.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
regulatory-submissionAcademic Writing “Prepare FDA/EMA regulatory submissions (IND/NDA/BLA/510(k)/PMA/MAA) in CTD format. Generate module outlines (Modules 1-5), run ICH compliance checks (ALCOA+, E6 GCP, Q1-Q12), verify data integrity, and produce submission-ready dossiers with cover letters and checklists.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
reporting-guideline-compliance-checkerAcademic Writing “Checks biomedical manuscripts against reporting guidelines such as CONSORT, STROBE, PRISMA, and TRIPOD to identify missing or weak reporting elements before submission or revision.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
residency-interview-prepAcademic Writing “Mock interview preparation tool for residency Match interviews. Generates.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
response-letterAcademic Writing “Helps organize reviewer comments and generate a standardized Word (.docx) response letter that maps each change to its exact location (page/paragraph/line). Use when revising a manuscript, replying to peer-review feedback, or preparing internal review responses.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
response-tone-polisherAcademic Writing “Polish reviewer-response letters by softening defensive language, preserving factual meaning, and keeping responses professional, concise, and publication-appropriate.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
results-section-structurerAcademic Writing “Organizes biomedical figures, analyses, and result blocks into a clear Results section structure with disciplined narrative ordering and evidence-aware presentation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
results-section-writerAcademic Writing “Writes the full Results section of a biomedical manuscript from a sufficiently clear result structure, figure inventory, or analysis summary while preserving evidence boundaries and result hierarchy.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
revision-strategy-plannerAcademic Writing “Builds prioritized manuscript revision plans for major or minor revisions by separating comments that require experiments, analyses, clarification, restructuring, or wording changes.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
sample-size-power-calculatorAcademic Writing “Advanced sample size and power calculations for complex study designs including survival analysis, clustered designs, and multiple comparisons.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
semantic-consistency-auditorAcademic Writing “Use semantic consistency auditor for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
slide-deck-for-lab-meetingAcademic Writing “Structures research progress into focused and actionable slides for lab meetings or project reviews without inventing missing content.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
study-limitations-drafterAcademic Writing “Use study limitations drafter for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
style-journal-rewriteAcademic Writing “Rewrite drafts according to target writing style or target journal format. Triggers when user says "rewrite in XX style", "match this tone", "format for XX journal", "rewrite following this format". Input can be .docx / .md / .txt or conversation text.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
systematic-reviewAcademic Writing “Orchestrates a systematic review and meta-analysis workflow following PRISMA 2020 guidelines, from protocol development through multi-database search, screening, data extraction, and evidence synthesis. Use when conducting evidence-based reviews, meta-analyses, or scoping revi...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
table-narrative-writerAcademic Writing “Converts biomedical table content into clear manuscript or presentation narrative by prioritizing meaningful patterns, contrasts, and interpretation boundaries rather than restating every number.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
target-journal-matcherAcademic Writing “Matches your study to appropriate journals based on topic, design, and evidence strength. Use when deciding where to submit a manuscript, comparing journal options by impact factor vs scope fit vs method tolerance, or finding a realistic submission target after a rejection. Also triggers on "where should I submit this paper", "which journal is best for my study", "find journals for my manuscript", "is this a good fit for [journal]", or "I need a journal with IF around X".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
title-and-abstract-optimizerAcademic Writing “Optimizes manuscript titles and abstracts for information density, factual accuracy, and submission fit in biomedical research writing.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
tone-adjusterAcademic Writing “Use when converting medical text between academic and patient-friendly tones, translating medical jargon for patients, adapting research papers for public audiences, or rewriting clinical notes for patient handouts. Maintains medical accuracy while adjusting readability level.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
usmle-case-generatorAcademic Writing “Generate USMLE Step 1/2 style clinical cases with patient history, physical.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
visual-content-descAcademic Writing “Generates detailed text descriptions of medical images and charts for.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
d-molecule-ray-tracerData Analysis “Generate photorealistic rendering scripts for PyMOL and UCSF ChimeraX.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
adme-property-predictorData Analysis “Analyze data with `adme-property-predictor` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
anndataData Analysis “Data structure for annotated matrices in single-cell analysis; use when reading/writing .h5ad (or zarr) and exchanging data with the scverse ecosystem.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
baseline-extraction-for-clinical-trialsData Analysis “Extracts clinical trial baseline data (study, region, participants, etc.) from article text or PMID. Checks PubMed for metadata; always falls back to LLM extraction for full details.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
batch-effect-correctionData Analysis “Use when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after QC plots. NOT for: single-cell integration, raw FASTQ processing, differential expression without batch labels, or datasets without biological groups.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
bio-causal-genomics-mediation-analysisData Analysis “Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package. Tests whether gene expression, methylation, or other molecular phenotypes mediate the effect of genetic variants on disease. Use when testing whether a molecular...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
bio-causal-genomics-pleiotropy-detectionData Analysis “Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directional pleiotropy, and Steiger filtering for variant directionality. Use when validating MR results, detecting pleiotropic instrum...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biopythonData Analysis “A comprehensive toolbox for computational molecular biology; use it when you need programmatic sequence/structure parsing, batch bioinformatics pipelines, or automated NCBI/BLAST workflows.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biopython-advancedData Analysis “Advanced Biopython modules for motifs, population genetics, sequence utilities, restriction analysis, clustering, and GenomeDiagram visualization; use when you need extended bioinformatics analysis beyond basic sequence I/O and alignment.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biopython-alignmentData Analysis “Sequence alignment and alignment file processing with Biopython (Bio.Align/Bio.AlignIO), triggered when you need global/local pairwise alignment, MSA read/write/format conversion, or alignment statistics/filtering.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biopython-phyloData Analysis “Use Bio.Phylo to read/write phylogenetic trees and perform visualization and statistics; use when tree parsing/conversion, pruning/rerooting, distance calculation, or plotting is required.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biopython-sequence-ioData Analysis “Use Biopython to read/write/convert biological sequence files (FASTA/GenBank/FASTQ, etc.) and perform basic sequence operations; use when you need reliable sequence I/O, lightweight sequence manipulation, or scalable processing of large sequence datasets.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biopython-structureData Analysis “Use Bio.PDB to parse and analyze protein structures (PDB/mmCIF) for structural bioinformatics tasks; use when you need structure parsing, geometry calculations, or structural comparison/superposition.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
bioservicesData Analysis “Unified Python access to 40+ bioinformatics web services; use when you need to query multiple databases (e.g., UniProt/KEGG/ChEMBL/Reactome) with one consistent API in a single workflow, especially for cross-database analysis and identifier mapping.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
case-control-study-quality-assessment-nosData Analysis “Clinical Research Bias Assessment - Case-Control Study (NOS) v2.3.0. Use when you need to assess the bias of a case-control study using the Newcastle-Ottawa Scale (NOS) criteria, or when evaluating the quality of a medical paper.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cerna-analysisData Analysis “Use when building a ceRNA regulatory network from a key gene list by combining bundled miRNA-mRNA and miRNA-lncRNA database files, with flat-file CSV exports and PDF visualization in a single output directory. NOT for: differential expression, single-cell analysis, enrichment analysis, or workflows without a key gene list.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cibersort-immune-infiltration-analysisData Analysis “Use when estimating relative immune cell infiltration from a bulk expression matrix with a CIBERSORT-style nu-SVR deconvolution workflow based on an LM22 signature matrix, comparing one case group against one control group, and generating structured tables plus immune-fraction plots. NOT for single-cell RNA-seq, spatial data, clinical diagnosis, or workflows that require the original hosted CIBERSORT web service.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
circos-plot-generatorData Analysis “Generate Circos configuration files for circular genomics data visualization. Supports genomic variations (SNPs, CNVs, structural variants), cell-cell communication networks, and custom track configurations for publication-ready circular plots.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinical-data-cleanerData Analysis “Use when cleaning clinical trial data, preparing data for FDA/EMA submission, standardizing SDTM datasets, handling missing values in clinical studies, detecting outliers in lab results, or converting raw CRF data to CDISC format. Cleans and standardizes clinical trial data fo...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cnv-caller-plotterData Analysis “Detect copy number variations from whole genome sequencing data and generate publication-quality genome-wide CNV plots. Supports CNV calling, segmentation, and visualization for cancer genomics and rare disease analysis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cobrapyData Analysis “Constraint-based reconstruction and analysis (COBRA) for metabolic models; use when you need to simulate growth/production, analyze flux ranges, or run knockout and medium studies from SBML/JSON/YAML models.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
code-refactor-for-reproducibilityData Analysis “Use when refactoring research code for publication, adding documentation to existing analysis scripts, creating reproducible computational workflows, or preparing code for sharing with collaborators. Transforms research code into publication-ready, reproducible workflows. Adds documentation, implements error handling, creates environment specifications, and ensures computational reproducibility for scientific publications.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cohort-study-quality-assessment-nosData Analysis “Evaluates the quality of cohort studies using the Newcastle-Ottawa Scale (NOS). Use when the user provides a cohort study article or text and needs a quality assessment report.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
consensus-clustering-analysisData Analysis “Use when identifying stable sample subtypes from bulk expression matrices with ConsensusClusterPlus, including PAC-based model selection and consensus matrix/CDF visualization. NOT for: differential expression analysis, single-cell clustering workflows, or non-expression tables.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
crispr-screen-analyzerData Analysis “Process CRISPR screening data to identify essential genes and hit candidates. Performs quality control, statistical analysis (RRA), and hit calling for pooled CRISPR screens including viability screens and drug resistance/sensitivity studies.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
data-stats-analysisData Analysis “Perform statistical tests, hypothesis testing, correlation analysis, and multiple testing corrections using scipy and statsmodels. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
data-transformData Analysis “Transform, clean, reshape, and preprocess data using pandas and numpy. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
decision-curve-analysisData Analysis “Use when evaluating the clinical utility of a binary prediction model from a single clinical CSV file by fitting a logistic decision-curve model, plotting decision and clinical-impact curves, and exporting summary outputs. NOT for: survival calibration, ROC-only discrimination analysis, nomogram construction, or time-to-event outcomes.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
decision-tree-analysisData Analysis “Use when building a decision tree model in R and generating feature importance ranking outputs. Supports classification and regression, automatic task detection, parameter validation, model evaluation summaries, and exports of feature-importance tables and figures.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
deeptoolsData Analysis “NGS analysis toolkit. Used for BAM to bigWig conversion, quality control (correlation, PCA, fingerprint plots), heatmaps/feature plots (TSS, peaks), suitable for ChIP-seq, RNA-seq, ATAC-seq visualization.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
deg-screening-analysisData Analysis “Use when screening differentially expressed genes from a bulk expression matrix between two user-specified groups, producing DEG tables, a volcano plot, and a clustered heatmap. Triggers include DEG analysis, volcano plot, clustered heatmap, limma-based two-group comparison, and case-vs-control screening. NOT for single-cell RNA-seq, multi-group contrasts, count-model workflows such as DESeq2/edgeR, or non-expression omics data.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
diagnostic-study-quality-assessment-quadasData Analysis “Analyzes clinical diagnostic accuracy studies for bias using the QUADAS-2 tool. Use when Claude needs to assess the quality, risk of bias, or applicability of diagnostic accuracy studies (e.g., "Assess this paper using QUADAS-2").” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
differential-expression-analysisData Analysis “Use when analyzing bulk RNA-seq or microarray expression data to identify differentially expressed genes between two biological groups (case vs control), with volcano plots and heatmap visualization. NOT for:single-cell RNA-seq, methylation analysis, non-expression data.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
dnanexus-integrationData Analysis “DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, process FASTQ/BAM/VCF, for developing and executing genomics pipelines.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
elastic-net-feature-selectionData Analysis “Use when selecting predictive genes or other molecular features from bulk expression matrices for binary case-vs-control classification with elastic net logistic regression, including coefficient path and cross-validation plots. Trigger keywords: elastic net, glmnet, feature selection, binary classification, lambda.min, lambda.1se. NOT for: survival/Cox modeling, multiclass outcomes, single-cell data, or non-expression tables.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
epidemiologyData Analysis “Performs epidemiological analyses including disease modeling (SIR/SEIR), outbreak investigation, risk factor identification, incidence/prevalence estimation, and causal inference from observational data; trigger when users discuss disease spread, public health data, or populat...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
estimate-immune-score-analysisData Analysis “Use this skill to compute ESTIMATE immune-related microenvironment scores from a bulk expression matrix, generate an ESTIMATE score heatmap, and optionally generate group-wise ESTIMATE score boxplots plus significance tables when a sample group file is supplied. Trigger keywords: ESTIMATE, immune score, stromal score, tumor microenvironment score. NOT for: immune cell deconvolution, single-cell analysis, differential expression, clinical diagnosis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
etetoolkitData Analysis “ETE (Environment for Tree Exploration) toolkit for phylogenetic and hierarchical tree analysis; use it when you need to parse/manipulate Newick/NHX trees, detect duplication/speciation events, integrate NCBI taxonomy, and render publication-quality figures.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
experimental-data-analysisData Analysis “Statistical analysis and reporting for experimental datasets; use when you need to interpret experimental results, test significance (t-tests/ANOVA), or generate reproducible reports.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
exploratory-data-analysisData Analysis “Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generate...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
external-model-validationData Analysis “Use when validating an existing prognostic risk signature on an external bulk expression cohort with survival outcomes, producing risk scores, Kaplan-Meier curves, risk distribution plots, heatmap, and time-dependent ROC curves. NOT for: model training, feature selection, nomogram construction, calibration analysis, or single-cell data.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
facs-gating-viz-styleData Analysis “Use facs gating viz style for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
fastqc-report-interpreterData Analysis “Use when analyzing FASTQC quality reports from sequencing data, identifying quality issues in NGS datasets, or troubleshooting sequencing problems. Interprets quality metrics and provides actionable recommendations for RNA-seq, DNA-seq, and ChIP-seq data.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
flowioData Analysis “Parse Flow Cytometry Standard (FCS) files v2.0–3.1 and extract events/metadata for preprocessing workflows (e.g., when you need NumPy arrays, channel info, or CSV/DataFrame export from cytometry files).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
forest-plot-stylerData Analysis “Analyze data with `forest-plot-styler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
gene-protein-expression-matrix-normalizationData Analysis “Use when normalizing bulk gene or protein expression matrices with log2 transform, z-score standardization, or min-max scaling before downstream visualization or exploratory analysis. NOT for count-model normalization such as TPM/DESeq2 size factors, batch correction, or single-cell preprocessing.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
gene-structure-mapperData Analysis “Use gene structure mapper for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
genimlData Analysis “Machine learning toolkit for genomic interval (BED) data; use it when you need to tokenize BED collections and train embeddings for regions/cells/labels, build consensus peak universes, or run similarity search and downstream ML on chromatin accessibility datasets.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
geopandasData Analysis “A Python library for reading, writing, and analyzing geospatial vector data; use it when you need spatial operations (buffer/overlay/join), CRS reprojection, or map visualization on formats like Shapefile/GeoJSON/GeoPackage or PostGIS.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
gokegg-analysisData Analysis “Use when performing GO and KEGG enrichment on a gene list from bulk RNA-seq or microarray studies, then generating a combined GO/KEGG dot chart. NOT for single-cell RNA-seq, methylation data, or non-expression data.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
graphical-abstract-wizardData Analysis “Generate graphical abstract layout recommendations based on paper abstracts.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
gseaData Analysis “Run GSEA on a ranked gene list and produce the enrichment table, running-score table, and enrichment plots.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
gsva-analysis-and-visualizationData Analysis “Use this skill to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object. Trigger keywords: GSVA, ssGSEA, pathway enrichment, KEGG pathway analysis, MSigDB. NOT for: gene-level differential expression, single-cell analysis, methylation analysis, clinical diagnosis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
gtarsData Analysis “A high-performance Rust toolkit (with Python bindings and a CLI) for genomic interval analysis; use it when you need fast overlap queries, coverage track generation, genomic tokenization for ML, reference sequence verification, or fragment processing.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
heatmap-beautifierData Analysis “Professional beautification tool for gene expression heatmaps, automatically adds clustering trees, color annotation tracks, and intelligently optimizes label layout.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
hierarchical-clustering-plotData Analysis “Use when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample similarity assessment. Trigger keywords: hierarchical clustering, dendrogram, sample QC, batch inspection, sample similarity. NOT for: differential expression testing, gene clustering heatmaps, single-cell clustering workflows.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
histolabData Analysis “Digital pathology image processing toolkit for whole slide images (WSI). Supports WSI formats (SVS, TIFF, NDPI), tile-based analysis, and histological image preprocessing workflows.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
immune-pathway-analysisData Analysis “Run immune pathway GSVA or ssGSEA analysis from a bulk expression matrix, a sample group file, and a local immune Reactome gene-set table, then export differential pathway results and a heatmap for two-group comparison.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
km-survival-curveData Analysis “Use when generating Kaplan-Meier survival curves from tabular survival data containing time, event status, and a precomputed risk group. Supports command-line parameter input, parameter validation, automatic time-unit handling, single-file PDF figure export, and session metadata capture.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
knn-imputationData Analysis “Use when filtering genes with high missingness and then imputing missing values in a bulk expression matrix with group-aware KNN through DMwR2, where donor samples are restricted by one annotation column before imputation. For strata with 10 or fewer samples, the script falls back to row-wise direct filling with mean or median. NOT for: single-cell data, multi-column stratification, non-tabular inputs, network access, or interactive workflows.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
lab-budget-forecasterData Analysis “Use lab budget forecaster for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
lamindbData Analysis “This skill is applicable when using LaminDB. LaminDB is an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR-compliant. It is suitable for managing biological datasets (scRNA-seq, spatial transcriptomics, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakes, or ensuring data lineage and reproducibility in biological research. It covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integration with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
lasso-logistics-analysisData Analysis “Use when building a binary classification model from an expression matrix or other omics feature matrix with LASSO logistic regression, cross-validation, and coefficient path visualization. NOT for: multiclass classification, survival/Cox models, or ordinary linear regression.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
lightgbm-analysisData Analysis “Use when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
lipinski-rule-filterData Analysis “Filter compound libraries based on Lipinski's Rule of Five for drug-likeness.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
lncrna-regulatory-network-construction-analysisData Analysis “Use this bioinformatics data analysis skill to construct a database-driven lncRNA-mRNA regulatory network from target lncRNA and/or gene lists by projecting shared miRNA evidence from local ceRNA reference tables. It does not infer networks from expression matrices.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
matchmsData Analysis “Process, clean, and compare mass spectrometry (MS/MS) spectra with Matchms; use when you need reproducible spectral filtering and similarity scoring for metabolomics workflows.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
matplotlibData Analysis “A low-level plotting library for comprehensive customization. Use when fine-grained control over every plot element is needed, creating new types of charts, or integrating into specific scientific workflows. Can export to PNG/PDF/SVG for publication. For quick statistical charts, use seaborn; for interactive charts, use plotly; for journal-style, publication-ready multi-panel charts, use scientific-visualization.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
mechanism-flowchartData Analysis “Generates Mermaid flowchart code and visual diagrams for pathophysiological.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-abstract-screenerData Analysis “Screens research papers based on title/abstract and inclusion criteria, providing a structured Yes/No/Maybe decision. Use when you need to filter literature for meta-analysis or systematic reviews.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-baujat-plotData Analysis “Generate Baujat plots for heterogeneity analysis. Identify studies that contribute most to the overall meta-analysis results and heterogeneity, helping discover potential outlier studies. Input meta-analysis data CSV, output Baujat plot PNG and contribution data CSV.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-criteria-generatorData Analysis “Generates scientifically sound inclusion and exclusion criteria for Meta-Analysis based on a given title or keywords. Use when user wants to design eligibility criteria for a systematic review or meta-analysis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-feasibility-analyzerData Analysis “Analyzes the feasibility of a proposed Meta-analysis topic by searching for existing Meta-analyses and Clinical Trials on PubMed/ClinicalTrials.gov. Use when you need to evaluate if a topic is viable for a new Meta-analysis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-forest-binary-plotData Analysis “Generate meta-analysis forest plots for binary classification data. Input is a CSV file containing study names, event counts and sample sizes for experimental and control groups. Output includes forest plot PNG and data table CSV.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-forest-continuous-plotData Analysis “Generate forest plots for meta-analysis of continuous data. Input a CSV file containing study names, means, standard deviations, and sample sizes for experimental and control groups. Output forest plot PNG and data table CSV.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-forest-model-plotData Analysis “Generate forest plots for meta-analysis of survival data. Input is a CSV file containing study names, HR and 95% confidence intervals, output forest plot PNG and data table CSV. Supports both R and Python scripts.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-funnel-plotData Analysis “Generate Meta-analysis funnel plots and perform publication bias testing. Takes CSV file with Meta-analysis data as input, outputs funnel plot PNG, Egger test and Begg test results.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-picos-generatorData Analysis “Generates PI(E)COS structure (Population, Intervention, Comparator, Outcomes, Study Design) from Meta-analysis or study titles. Use when the user wants to extract these elements from a title.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-radial-plotData Analysis “Generate radial plots (Radial Plot/Galbraith Plot) for heterogeneity analysis. Visually assess heterogeneity across studies by displaying the relationship between standardized effect sizes and precision. Input: Meta-analysis data in CSV format; Output: Radial plot PNG and data CSV.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-rob-plotData Analysis “Draw ROB2 risk-of-bias plots, including a Traffic Light Plot and a Summary Bar Plot. Input is a CSV file with ROB2 assessments for each study; output are two PNG plot files.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-screening-fulltextData Analysis “Screen full-text papers against inclusion/exclusion criteria, with optional PubMed metadata check using PMID. Use when the user needs to evaluate a paper for a meta-analysis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-sensitivity-plotData Analysis “Generate leave-one-out sensitivity analysis plots for meta-analysis. Input is a CSV file containing meta-analysis data; outputs are a sensitivity forest plot (PNG) and a sensitivity data table (CSV) showing pooled effect estimates after excluding each study in turn.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-title-generatorData Analysis “Generates Meta-Analysis research titles based on user keywords, utilizing PubMed search results if available, or creative generation otherwise. Use when the user wants to brainstorm or generate titles for a meta-analysis, specifically starting from keywords or a topic.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
metabolomics-workbench-databaseData Analysis “Access NIH Metabolomics Workbench (4,200+ studies) via REST API. Query metabolites, RefMet nomenclature, MS/NMR data, m/z search, study metadata for metabolomics and biomarker discovery.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
metagenomic-krona-chartData Analysis “Analyze data with `metagenomic-krona-chart` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
model-calibration-curveData Analysis “Use when assessing how well a survival model's predicted probabilities agree with observed outcomes by fitting a Cox model and generating bootstrap calibration curves at one or more prediction horizons from a clinical CSV file. NOT for: nomogram construction, univariate Cox screening, ROC analysis, or decision-curve analysis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
motif-logo-generatorData Analysis “Generate publication-quality sequence logos for DNA or protein motifs.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
neoantigen-predictorData Analysis “Predict neoantigens that may be recognized by the immune system based.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
neurokitData Analysis “Comprehensive biosignal processing for ECG/PPG/EEG/EDA/RSP/EMG/EOG; use when you need to clean, segment, and extract physiological features for HRV, event-related responses, complexity metrics, or multimodal psychophysiology pipelines.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
neuropixels-analysisData Analysis “End-to-end Neuropixels extracellular electrophysiology analysis (SpikeGLX/Open Ephys/NWB) including preprocessing, motion correction, Kilosort4 spike sorting, QC metrics, and Allen/IBL-style curation; use when processing Neuropixels recordings or when users mention Neuropixels, SpikeGLX, Open Ephys, Kilosort, quality metrics, drift/motion correction, or unit curation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
nomogram-constructionData Analysis “Use when constructing a prognosis nomogram from survival-related clinical predictors, exporting the nomogram bundle and C-index table, and optionally rendering the final nomogram PDF. NOT for: univariate/multivariable Cox feature screening, calibration curves, ROC analysis, decision-curve analysis, or non-survival outcomes.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
outcome-extraction-for-clinical-trialsData Analysis “Clinical research outcome extraction for meta-analysis. Use when users need to extract outcome measures (binary, continuous, or survival data) from clinical research papers for systematic review and meta-analysis. Handles both database lookup by PMID and real-time LLM extraction.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
outlier-detection-handlerData Analysis “Use outlier detection handler for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pathmlData Analysis “A full-featured computational pathology toolkit for advanced WSI analysis, including multiplexed immunofluorescence (CODEX, Vectra), nuclei segmentation, tissue graph construction, and machine learning model training on pathology data. Supports over 160 slide formats. For simp...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pathology-roi-selectorData Analysis “Use pathology roi selector for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pca-dimensionality-reductionData Analysis “Use when performing PCA principal component dimensionality reduction on tabular numeric data. Supports command-line parameter input, automatic numeric feature selection, parameter validation, result directory creation, and CSV or TXT format result export.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
phylogenetic-tree-stylerData Analysis “Analyze data with `phylogenetic-tree-styler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
ppi-network-analysisData Analysis “Use when you need a standardized R CLI workflow to build a protein-protein interaction network from a local gene list and an offline STRING cache, export node and edge tables, and render a reproducible PDF network plot. NOT for online API fetching, arbitrary graph databases, multi-omics integration, or non-STRING interaction sources.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
preclinical-pkpd-analystData Analysis “Use preclinical pkpd analyst for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
probast-quality-assessment-for-prediction-model-studiesData Analysis “Assess bias in medical prediction model studies using PROBAST tool. Use when user wants to evaluate the quality or risk of bias of a medical paper (text or PDF).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
protocol-deviation-classifierData Analysis “Classify clinical trial protocol deviations as major or minor based on ICH E6/GCP guidelines. Three-impact-dimension assessment (safety, data integrity, scientific validity), confidence scoring, and regulatory compliance reporting with recommended actions.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pseudotime-trajectory-vizData Analysis “Analyze data with `pseudotime-trajectory-viz` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pydeseqData Analysis “Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for condition/batch/covariate designs.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pydicomData Analysis “A Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when you need to read, write, or modify DICOM format medical imaging data, extract pixel data from medical images (CT, MRI, X-ray, ultrasound), anonymize DICOM files,...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pyhealthData Analysis “Healthcare AI toolkit for clinical ML. EHR processing, clinical prediction (mortality, readmission, drug recommendation), medical coding (ICD/NDC/ATC), signals (EEG/ECG), datasets (MIMIC-III/IV, eICU, OMOP), and healthcare deep learning (RETAIN, SafeDrug, Transformer, GNN) via...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pyopenms-skillData Analysis “Comprehensive tool for computational mass spectrometry using PyOpenMS; use when you need to read/write MS formats (mzML/mzXML/MGF), run signal processing (smoothing/peak picking), detect isotope features, or perform peptide identification in proteomics/metabolomics workflows.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pysamData Analysis “Genomic file toolkit. For reading/writing SAM/BAM/CRAM alignment files, VCF/BCF variant files, FASTA/FASTQ sequences, extracting regions, calculating coverage, suitable for NGS data processing pipelines.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
quadas-c-assessment-for-diagnostic-accuracy-studiesData Analysis “Automated bias assessment for diagnostic accuracy studies using QUADAS-C criteria. Requires full text input.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
quality-assessmentData Analysis “Automates critical appraisal and quality assessment for research papers by analyzing text against established methodological standards (such as risk of bias tools, quality checklists, or reporting guidelines) and synthesizing a structured evaluation report. Use when you need to assess the methodological quality, internal validity, or reporting completeness of any type of study—including RCTs, observational studies, systematic reviews, qualitative research, or diagnostic accuracy studies.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
quapas-quality-assessment-for-prognosis-studiesData Analysis “Evaluates bias in medical literature (prognosis studies) using QUAPAS criteria. Use when the user wants to assess the quality or risk of bias of a medical paper text.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
rct-bias-assessment-robData Analysis “Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report. Use when you need to assess the quality of a clinical trial paper or evaluate risk of bias.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
rf-model-importance-analysisData Analysis “Use when you need a standardized R CLI workflow to train a two-class random forest model from an expression-like feature matrix, rank variable importance, and generate reproducible error and importance plots. NOT for regression tasks, multi-class classification, missing-value imputation, preprocessing, or remote data fetching.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
roc-diagnostic-performanceData Analysis “Use when evaluating diagnostic biomarker performance from case-control expression data with logistic regression and ROC curves, exporting coefficient and AUC tables together with a ROC PDF. NOT for: survival analysis, time-to-event outcomes, multiclass classification, calibration curves, decision-curve analysis, or nomogram construction.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
rowanData Analysis “Cloud-based quantum chemistry platform providing a Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformational search, molecular property calculations, protein-ligand docking (AutoDock Vina), and AI protein cofolding (Chai-1, Boltz-1/2). Suitable for tasks involving quantum chemistry calculations, molecular property prediction, DFT or semi-empirical methods, neural network potentials (AIMNet2), protein-ligand binding prediction, or automated computational chemistry pipelines. Provides cloud computing resources without local installation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
sample-correlation-analysisData Analysis “Use when performing correlation analysis between two variables including Pearson and Spearman correlation methods. Supports command-line parameter input, automatic data format detection, parameter validation, result directory creation, and CSV or TXT format result export.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
sample-group-sankey-plotData Analysis “Use when generating Sankey or alluvial plots from sample annotation tables where rows are samples and selected columns are categorical stages such as risk group, response status, subtype, or cohort labels. NOT for: gene network flow analysis, continuous-value trajectories, or graph-structured pathway visualization.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
sanger-chromatogram-qaData Analysis “Use sanger chromatogram qa for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
scanpyData Analysis “Standard single-cell RNA-seq analysis pipeline. For quality control (QC), normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression analysis, and visualization. Best suited for exploratory single-cell transcriptomics analysis using established workflows. For deep learning models, use scvi-tools; for data format issues, use anndata.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
scikit-bioData Analysis “A Python bioinformatics toolkit for sequence, phylogeny, and microbiome/community-ecology analysis; use it when you need to compute diversity/ordination/statistics from biological data and standard formats (FASTA/FASTQ/Newick/BIOM).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
scikit-survivalData Analysis “A comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival; use it when you need to model censored time-to-event outcomes, fit Cox/RSF/GB models or Survival SVMs, evaluate with C-index/Brier score, or handle competing risks.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
scrna-cell-type-annotatorData Analysis “Auto-annotate cell clusters from single-cell RNA data using marker genes.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
scvi-toolsData Analysis “Deep generative models for single-cell omics; use when you need probabilistic batch correction (scVI), transfer learning, uncertainty-aware differential expression, or multimodal integration (totalVI/MultiVI).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
seabornData Analysis “Statistical visualization library integrated with pandas; use it when you need fast EDA of distributions, relationships, and categorical comparisons (e.g., box/violin/pair plots and heatmaps) with strong default aesthetics on top of matplotlib.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
sequence-alignmentData Analysis “A skill for performing sequence alignment using NCBI BLAST API. Supports nucleotide and protein sequence comparison against major biological databases.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
shapData Analysis “Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Feature importance, dependence plots, interaction effects, and fairness analysis for any black-box model.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
singlecell-portalData Analysis “Programmatically query public single-cell study metadata from the Broad Institute Single Cell Portal REST API when you need to search and filter datasets by organism, tissue, disease, or cell type without an API key.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
smiles-de-salterData Analysis “Analyze data with `smiles-de-salter` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
spatial-transcriptomics-mapperData Analysis “Map spatial transcriptomics data from 10x Genomics Visium/Xenium onto.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
ssgsea-immune-infiltration-analysisData Analysis “Use when estimating immune infiltration from bulk RNA-seq expression matrices with ssGSEA/GSVA, comparing case versus control groups, and generating downstream immune-score visualizations. NOT for single-cell RNA-seq, absolute cell proportion estimation, or clinical decision making.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
statistical-analysisData Analysis “Guided statistical analysis for test selection, assumption checks, power analysis, and APA-style reporting. Use when you need to choose an appropriate statistical test for your data and produce publication-ready results (including effect sizes and diagnostics).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
statistical-analysis-advisorData Analysis “Recommends appropriate statistical methods (T-test vs ANOVA, etc.) based.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
study-design-scale-selectorData Analysis “Determines the appropriate Risk of Bias assessment scale for a medical study based on its design (RCT, Cohort, etc.), using PubMed metadata lookup or text analysis. Use when the user wants to know which quality assessment tool to use for a specific paper (given PMID or abstract).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
survival-analysis-kmData Analysis “Kaplan-Meier survival analysis tool for clinical and biological research. Generates publication-ready survival curves with statistical tests.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
survival-curve-risk-tableData Analysis “Analyze data with `survival-curve-risk-table` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
svm-model-importance-analysisData Analysis “Use when you need a standardized R CLI workflow to run two-class SVM-RFE feature ranking on an expression-like matrix, choose an informative feature count from cross-validated error, and generate reproducible ranking and error plots. NOT for regression, multi-class classification, missing-value imputation, or remote data fetching.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
table-1-generatorData Analysis “Automated generation of baseline characteristics tables (Table 1) for clinical research papers.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
table-1-generator-advancedData Analysis “Generate publication-ready baseline characteristics tables (Table 1) for clinical research papers with automatic variable type detection, appropriate statistics (mean±SD, median[IQR, n(%)), group comparisons (t-test, chi-square), and APA formatting.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
tf-target-gene-regulatory-networkData Analysis “Use when analyzing transcription factor (TF) regulatory networks using Dorothea database. Input gene list, identify regulating transcription factors, generate TF-Target network visualization. For: transcription factor enrichment analysis, gene regulatory network research.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
time-dependent-rocData Analysis “Use when performing time-dependent ROC curve analysis for survival data with follow-up time, event status, and a numeric marker. Supports CSV/TXT/TSV/Excel input, `risk_score` as the default marker unless `--marker_col` is provided, parameter validation, standardized output directories, AUC table export, ROC point export, and PDF figure generation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
tooluniverse-statistical-modelingData Analysis “Statistical modeling and regression analysis for biomedical data. Linear/logistic/ordinal regression, Cox proportional hazards, mixed-effects models, ANOVA, with odds ratios, hazard ratios, confidence intervals, and model diagnostics.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
torchdrug-englishData Analysis “PyTorch-native Graph Neural Network framework for molecules and proteins. Suitable for building custom GNN architectures for drug discovery, protein modeling, or knowledge graph reasoning. Best for custom model development, protein property prediction, and retrosynthesis. If you need pretrained models and diverse feature extractors, use deepchem; if you need benchmark datasets, use pytdc.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
toxicity-structure-alertData Analysis “Analyze data with `toxicity-structure-alert` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
umap-tsne-analysisData Analysis “Use when performing sample-level dimensionality reduction and visualization on abundance or OTU-style matrices with a companion group file, generating UMAP and/or t-SNE coordinates and plots for group separation assessment. NOT for: differential expression testing, single-cell workflows requiring dedicated embeddings pipelines, or analyses without a sample grouping file.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
univariate-multivariable-cox-regressionData Analysis “Use when running prognostic survival analysis on a clinical cohort with time-to-event data to estimate univariate and multivariable Cox proportional hazards models, export result tables, and generate forest plots. NOT for: nomogram construction, calibration curves, time-dependent ROC analysis, or model training/feature selection beyond the built-in univariate screening rule.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
upset-plot-converterData Analysis “Convert complex Venn diagrams with more than 4 sets to clearer Upset.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
variant-pathogenicity-predictorData Analysis “Integrate REVEL, CADD, PolyPhen scores to predict variant pathogenicity.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
volcano-plot-labelerData Analysis “Analyze data with `volcano-plot-labeler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
volcano-plot-scriptData Analysis “Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. Triggered when user needs visualization of gene expression data, p-value vs fold-change scatter plots, publication-ready figures for bioinformatics analysis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
western-blot-quantifierData Analysis “Automatically identify Western Blot gel bands, perform densitometric analysis, and calculate normalized values relative to loading controls.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
wgcna-analysisData Analysis “Use when building a weighted gene co-expression network from a bulk expression matrix and a sample group file, filtering variable genes by MAD, identifying co-expression modules with WGCNA, correlating modules with traits, and exporting module-level plots and gene tables. NOT for single-cell RNA-seq, differential expression testing, methylation analysis, or datasets that are too small for WGCNA after quality control.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
xgboost-analysisData Analysis “Use when building XGBoost models on tabular data and returning feature importance ranking outputs. Supports binary classification and regression with automatic task detection, train-test split, performance tables, feature importance ranking tables, and PNG importance plots.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
acronym-unpackerEvidence Insight “Intelligent medical abbreviation disambiguation tool that resolves ambiguous acronyms using clinical context, specialty-specific knowledge, and document-level semantic analysis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
alphafold-dbEvidence Insight “Access over 200M protein structures from AlphaFold DB; use when you need to retrieve predicted 3D structures (PDB/mmCIF), confidence metrics (pLDDT/PAE), or protein metadata by UniProt accession.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
arboretoEvidence Insight “Infer gene regulatory networks (GRNs) from gene expression matrices using GRNBoost2 or GENIE3; use when analyzing bulk or single-cell RNA-seq to identify TF→target regulatory relationships.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
arxiv-databaseEvidence Insight “Search and retrieve scientific preprints from arXiv; use it when you need to find papers by keyword/author/category, fetch metadata (abstract, DOI, PDF URL), or download PDFs for offline reading.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
basic-discovery-translational-opportunity-finderEvidence Insight “Finds translational opportunities that connect basic-research discoveries to clinically meaningful use cases such as diagnosis, stratification, prognosis, treatment response prediction, monitoring, or therapeutic development. Use this skill when a user wants to turn a mechanism finding, pathway signal, cellular phenotype, experimental observation, or omics discovery into a stronger translational research direction. Always separate mechanistic relevance from translational usability, and never present a basic finding as clinically actionable unless the evidence supports that level.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
bio-ontology-mapperEvidence Insight “Map unstructured biomedical text to standardized ontologies (SNOMED CT.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biogrid-orcsEvidence Insight “Accesses BioGRID ORCS CRISPR screen data (organisms, screens, scores). Invoke when user needs to search CRISPR screens, get vocabulary, or retrieve gene scores.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
bioinformatics-translational-opportunity-finderEvidence Insight “Identifies translationally meaningful paths for bioinformatics findings by mapping omics or computational discoveries to diagnosis, stratification, prognosis, treatment-response, monitoring, or target-nomination use cases, while auditing bridge evidence, assayability, and validation burden. Use this skill when a user wants to know whether a bioinformatics finding can be framed as a stronger translational topic without overclaiming clinical relevance. Always separate statistical signal from translational value, and never imply clinical utility, targetability, or validation depth without explicit evidence support.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
biomarker-landscape-scannerEvidence Insight “Scans the biomarker landscape of a disease area by biomarker type, clinical/research use case, evidence layer, validation status, and maturity level. Use this skill when a user wants a field-level biomarker evidence map rather than a generic literature summary. Always separate exploratory biomarkers from externally validated or clinically embedded biomarkers, and never imply clinical maturity without explicit evidence support.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
biomedical-search-strategy-builderEvidence Insight “Builds professional search strategies for PubMed, Embase, Web of Science, and similar databases. Use when a user needs to construct a MeSH-based Boolean query, design a systematic review search, expand a concept with synonyms, apply study-type or date filters, or adapt a query across multiple databases. Also triggers when the user says "help me search for papers on X", "build a search strategy", "what are the MeSH terms for", or "I need a systematic review search string".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biopython-entrezEvidence Insight “Use Bio.Entrez to access NCBI databases (e.g., PubMed/GenBank) for searching, fetching summaries, and downloading records when your workflow needs to call the NCBI E-utilities API over the network.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biorxiv-databaseEvidence Insight “Search, retrieve metadata, and download PDFs for bioRxiv preprints; use when you need to discover biology preprints by keywords/authors/date ranges and programmatically fetch their details.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
blockbuster-therapy-predictorEvidence Insight “Comprehensive analytics tool for forecasting breakthrough therapeutic technologies by integrating multi-dimensional data sources including clinical development pipelines, intellectual property landscapes, and capital mar.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
brenda-databaseEvidence Insight “Programmatic access to the BRENDA enzyme database via the SOAP API; use when you need kinetic constants (Km, kcat, Vmax), reaction equations, enzyme properties (pH/temperature optima, stability), or enzyme discovery by EC/substrate/product.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cellosaurus-apiEvidence Insight “Access Cellosaurus database for cell line information and release data. Invoke when user asks to search cell lines, get cell line details by accession, or check database release info.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cellxgene-censusEvidence Insight “Programmatically query the CZ CELLxGENE Census (61M+ cells) when you need cross-tissue, disease, or cell-type expression data for population-scale queries and reference atlas comparisons.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
chea-apiEvidence Insight “Access ChEA3 and Harmonizome ChEA data for transcription factor enrichment analysis and metadata retrieval. Use when the user needs to perform ChEA3 enrichment analysis on a gene set, get metadata about the ChEA dataset, or retrieve information about a specific transcription factor (attribute).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
chembl-databaseEvidence Insight “Query the ChEMBL database for bioactive molecules, targets, bioactivities, and approved drugs; use this when you need to filter by physicochemical properties (e.g., MW, LogP), chemical structure (SMILES), or retrieve drug mechanism information.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
citation-chasing-mappingEvidence Insight “Use when identifying seminal papers in a research field, mapping research lineage and intellectual heritage, discovering related work through reference tracking, or finding potential collaborators through co-citation analysis. Maps citation networks to trace research evolution...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
citation-managementEvidence Insight “Comprehensive citation management for academic research; use when you need to discover papers (Google Scholar/PubMed), extract/verify metadata (DOI/PMID/arXiv/URL), and produce validated, clean BibTeX for manuscripts.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
citation-networkEvidence Insight “Build and visualize a citation network from a source/target CSV to identify key papers, communities, and emerging hotspots; use when you have citation pairs and need fast literature review or trend analysis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinical-question-clarifierEvidence Insight “Clarifies a vague clinical or biomedical research idea into a structured, bounded, searchable, researchable, and testable question. Always use this skill whenever a user has an early-stage clinical or research thought, an over-broad topic, an ill-defined evidence question, or an unclear problem statement that must be translated into a question framing suitable for literature retrieval, evidence synthesis, gap analysis, study design, or downstream protocol planning. Never jump straight to answering the substantive medical question unless the user explicitly asks for that. Focus first on question framing, boundary setting, and downstream-ready formulation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinical-study-info-extractorEvidence Insight “Batch extracts and verifies structured information (PMID, title, abstract, methodology, results, etc.) from clinical research literature using PMIDs. Use when the user wants to extract details from specific PMIDs.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinical-trial-finderEvidence Insight “Find clinical trials for a gene, variant, or condition from ClinicalTrials.gov + EUCTR, with FHIR R4 output” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinicaltrials-databaseEvidence Insight “Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinicaltrials-dbEvidence Insight “Query the ClinicalTrials.gov API v2 to search for clinical trials, retrieve detailed study protocols, and analyze recruitment status; use when you need to find trials by condition/drug, export results, or verify study details by NCT ID.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinicaltrials-gov-parserEvidence Insight “Monitor and summarize competitor clinical trial status changes from ClinicalTrials.gov.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinpgx-databaseEvidence Insight “Access ClinPGx pharmacogenomics data (successor to PharmGKB) when you need to query gene-drug interactions, CPIC guidelines, allele functions, and drug-label PGx content for precision medicine and genotype-guided dosing.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinvar-databaseEvidence Insight “Utilities for querying the NCBI ClinVar database to retrieve variant records, clinical significance, and phenotype relationships; use when searching variants by gene/condition/significance, interpreting Pathogenic/Benign/VUS classifications, or annotating VCF files with ClinVar annotations.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
comparison-table-genEvidence Insight “Auto-generates comparison tables for concepts, drugs, or study results.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
competitor-trial-monitorEvidence Insight “Monitor competitor clinical trial progress and alert on market risks.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
concept-explainerEvidence Insight “Uses analogies to explain complex medical concepts in accessible terms.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
contradictory-findings-resolverEvidence Insight “Explains why studies on the same biomedical topic reach different or opposing conclusions by auditing differences in population, endpoint definition, sample source, assay or platform, study design, statistical model, adjustment strategy, validation chain, and bias control. It separates true contradiction from apparent contradiction caused by framing or methods. Never fabricate references, PMIDs, DOIs, trial identifiers, dataset details, platform details, study features, or conflict explanations that are not supported by the input.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cosmic-databaseEvidence Insight “Access COSMIC to download mutation datasets, query Cancer Gene Census, and retrieve mutational signatures when your genomic analysis requires curated somatic mutation resources.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cross-disciplinary-bridge-finderEvidence Insight “Use when identifying collaboration opportunities across fields, finding experts in complementary disciplines, translating methodologies between scientific domains, or building interdisciplinary research teams. Identifies synergies between scientific disciplines, matches researchers with complementary expertise, and facilitates cross-domain collaborations. Supports interdisciplinary grant applications and innovative research team formation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
crossref-databaseEvidence Insight “Access CrossRef metadata for scholarly works; use when you need to resolve a DOI or search CrossRef to retrieve bibliographic details, citation/reference counts, or funder information for research and citation management.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
ctd-apiEvidence Insight “Accesses Comparative Toxicogenomics Database (CTD) for chemical, gene, disease, and pathway interaction data. Invoke when user needs to query CTD, retrieve toxicogenomics data, or investigate chemical-disease relationships.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
diagnostic-study-quality-assessment-quadas-2Evidence Insight “Analyzes clinical diagnostic accuracy studies for bias using the QUADAS-2 tool. Use when Claude needs to assess the quality, risk of bias, or applicability of diagnostic accuracy studies (e.g., "Assess this paper using QUADAS-2").” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
diffdock-molecular-dockingEvidence Insight “Diffusion-based molecular docking to predict 3D ligand–protein binding poses (blind docking) with confidence scoring; use when you need pose prediction for drug discovery or virtual screening.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
disease-mechanism-evidence-mapEvidence Insight “Systematically maps mechanism evidence for a disease from molecules to pathways, cell types, tissues, biological consequences, and clinical phenotypes. Always use this skill when a user needs a layered mechanism evidence chain rather than a flat summary or immediate gap analysis. Formal literature citations must be real and verifiable.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
drug-interaction-checkerEvidence Insight “Check for interactions between multiple medications, including severity classification and mechanism explanations.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
drug-target-evidence-landscapeEvidence Insight “Organizes the evidence and competitive landscape around a drug, target, or pathway by separating disease relevance, tractability, preclinical evidence, clinical evidence, modality fit, and crowding. Always map what is biologically supported, what is druggable, what has actually advanced, and what remains strategically open. Never confuse target relevance with druggability, preclinical activity with clinical promise, or narrative excitement with validated development maturity. Never fabricate references, trial status, approval status, company activity, or asset metadata.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
drugbank-databaseEvidence Insight “Programmatic access to DrugBank drug and target data; use when you need to download, parse, and analyze DrugBank XML for properties, interactions, pathways, and pharmacology.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
emerging-topic-scoutEvidence Insight “A real-time monitoring system for identifying "incubation period" research hotspots in biological and medical sciences before they are defined by mainstream journals.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
ena-databaseEvidence Insight “Access the European Nucleotide Archive (ENA) via REST APIs and FTP/Aspera to search and retrieve sequences, raw reads (FASTQ), assemblies, and metadata when you have accession IDs or need metadata-driven discovery for genomics pipelines.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
encode-apiEvidence Insight “Access the ENCODE Project REST API to search for and retrieve biological data (biosamples, experiments, etc.). Use this skill when the user needs to query ENCODE data, search by keywords, or retrieve specific objects by accession ID.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
encori-apiEvidence Insight “Access ENCORI (StarBase) database for miRNA-target, RNA-RNA, and other regulatory data. Invoke when user asks to search ENCORI or retrieve regulatory interactions.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
ensembl-databaseEvidence Insight “Access Ensembl REST API for vertebrate genomic data; use when you need gene/ID lookups, sequence retrieval, variant effect prediction (VEP), or homology/assembly coordinate mapping.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
evidence-level-rankerEvidence Insight “Ranks papers by evidence family, methodological quality tier, validation depth, and claim discipline; assigns anchor, context-setting, mechanistic support, or caution citation roles; prevents prestige-based or design-label-based ranking errors.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
fda-databaseEvidence Insight “Query the openFDA API to retrieve FDA regulatory datasets (drugs, devices, adverse events, recalls, submissions, UNII) when you need programmatic safety/regulatory evidence for analysis or research.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
fda-guideline-searchEvidence Insight “Search FDA industry guidelines by therapeutic area or topic.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
figure-first-paper-readerEvidence Insight “Reads a paper figure by figure before re-integrating the full narrative, so the user can identify the core findings quickly and check whether each visual actually supports the authors' main claims. Always separate figure content, figure-linked claim, evidentiary strength, and unsupported interpretation. Never fabricate references, PMIDs, DOIs, figure content, panel labels, result values, or study details that were not actually provided.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
funding-trend-forecasterEvidence Insight “Analyze funding abstracts and project metadata to identify topic shifts and forecast near-term grant priorities.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
gene-databaseEvidence Insight “Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you need to search genes by symbol/ID and retrieve annotations (RefSeq, GO, location, phenotype) for single or batch gene lists.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
gene-infoEvidence Insight “Retrieves comprehensive gene information including PubMed publication counts, NCBI summaries, and Ensembl transcript data. Supports batch processing and file input. Invoke when the user asks for gene details, publication statistics, or needs to analyze a list of genes.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
geo-search-apiEvidence Insight “Search for gene expression DataSets and Profiles in the NCBI GEO database. Use this skill when the user wants to find microarray, RNA-seq, or other genomic data by keywords, organism, author, or specific fields.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
ggetEvidence Insight “Unified CLI/Python interface for querying genomic, proteomic, structure, and expression data across 20+ bioinformatics databases; use when you need fast, scriptable retrieval by gene/protein IDs or keywords.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
grant-funding-scoutEvidence Insight “NIH funding trend analysis to identify high-priority research areas.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
grant-gantt-chart-genEvidence Insight “Use grant gantt chart gen for evidence insight workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
gwas-databaseEvidence Insight “Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epidemiology and polygenic risk scores.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
hgnc-apiEvidence Insight “Access the HGNC (HUGO Gene Nomenclature Committee) database to search for and retrieve gene information including symbols, names, IDs, and other metadata.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
high-value-paper-screenerEvidence Insight “Quickly judges whether a biomedical paper is worth deep reading by screening for question fit, design quality, sample adequacy, methodological novelty, and reproducibility value.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
hmdb-databaseEvidence Insight “Access the Human Metabolome Database (HMDB) to search metabolites by name/structure/ID and extract chemical/biological/clinical fields when you need metabolomics research data or automated HMDB XML mining.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
ib-summarizerEvidence Insight “Summarize core safety information from Investigator's Brochures for clinical.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
jaspar-apiEvidence Insight “Access JASPAR database for transcription factor binding profiles (matrices), collections, and species via REST API. Use when user wants to search for transcription factors, retrieve matrix details (PFM/PWM), infer profiles from protein sequences, or explore JASPAR collections.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
journal-impact-factor-trendEvidence Insight “Show journal impact factor and quartile trends over 5 years.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
journal-latest-issueEvidence Insight “Retrieve the latest journal issue's table of contents and abstracts from URL/DOI/PMID/RSS/TOC sources, then generate Chinese key points locally (no external translation APIs) when a new issue needs quick review and archiving.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
journal-matchmakerEvidence Insight “Analyzes academic paper abstracts to recommend optimal journals for submission, considering impact factors, scope alignment, and domain expertise.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
journal-skillsEvidence Insight “Recommends target journals for manuscript submission by analyzing the paper topic/abstract and the journal distribution of similar PubMed literature; use when users ask for journal recommendation/matching, submission strategy, PubMed search, or similar-literature statistics.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
kegg-apiEvidence Insight “Access the KEGG database API to retrieve biological data (genes, pathways, compounds, drugs). Invoke when the user asks to search, list, or get details from KEGG.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
kegg-databaseEvidence Insight “Direct access to KEGG via the REST API for academic-only pathway/gene/compound/drug queries; use when you need precise HTTP-level control or targeted KEGG ID mapping.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
key-takeawaysEvidence Insight “Extracts and summarizes key takeaways from documents, meeting notes, articles, and other text content. Use when the user asks for summaries, bullet points, main points, highlights, or a TL;DR of any document or body of text. Produces structured outputs such as numbered lists, executive summaries, and action items. Supports configurable output formats including JSON export for downstream use.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
keyword-velocity-trackerEvidence Insight “Calculate literature growth velocity and acceleration to assess research.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
litbaseEvidence Insight “Academic paper reading and research development system for biomedical researchers. Finds papers via Semantic Scholar, reads with structured notes, tracks discussion insights, and synthesizes literature into a Research Foundation Document (RFD) for downstream protocol design skills. 8 commands: /setup /feed /read /discuss /recap /update /sync /propose” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
literature-close-readEvidence Insight “Produce a structured close-reading report from a paper's full PDF-to-Markdown text (with `## Page XX` pagination and image references) when you need to systematically extract background, research questions, methods, results, limitations, and reproducible experimental details.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
literature-experiment-extractEvidence Insight “Extract experimental models, experimental methods, and biomarker information from paper Markdown (typically produced by PDF-to-Markdown tools) when a user provides paper Markdown and needs a structured, evidence-backed summary (1 Markdown + 3 CSVs).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
literature-extensive-readEvidence Insight “Rapidly skim and summarize academic papers (default:PDF-to-Markdown full text with `## Page XX` pagination and image references) and output a structured extensive-reading summary in Markdown when you need to quickly understand research questions, methods, key results, conclusions, and decide whether intensive reading is worthwhile.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
literature-filteringEvidence Insight “Filter literature by publication year, journal, and predefined screening rules to produce inclusion/exclusion lists; use when conducting preliminary screening or systematic review screening to narrow the literature scope.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medchemEvidence Insight “Medicinal chemistry screening filters for compound prioritization; use when you need to apply drug-likeness rules, PAINS/structural alerts, and complexity metrics to triage or optimize libraries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-research-gap-finderEvidence Insight “Identifies real, evidence-audited, topic-specific research gaps in medical research by first retrieving and verifying literature from trusted sources, then mapping the current evidence landscape, rejecting pseudo-gaps, and converting only medium/high-confidence gaps into study-ready research opportunities. Always require real literature retrieval before formal gap claims. Never fabricate references, metadata, or findings.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-research-literature-reader-proEvidence Insight “A medical-research-native literature reading skill for users with clinical, bioinformatics, translational, and basic experimental backgrounds. Use this skill whenever a user wants to read, analyze, critique, or interpret a medical or scientific paper — whether they provide a PDF, abstract, DOI, PMID, or just a title. Triggers include requests like \"analyze this paper\", \"critique this study\", \"is this a strong paper?\", \"give me similar studies\", \"prepare me for journal club\", \"help me understand this bioinformatics paper\", \"what are the weaknesses here?\", or \"turn this into a mind map\". Also activate for any downstream deliverables such as journal club kits, comparison tables, PI decision briefs, replication starters, or follow-up experiment designs. Do NOT treat as a generic summarizer — this skill performs structured evidence-type classification, track-specific critical appraisal, interpretation-boundary judgment, and research-grade follow-up generation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-topic-saturation-and-whitespace-checkerEvidence Insight “Maps whether a biomedical research topic, subtopic, or study angle is truly saturated, superficially crowded, strategically occupied, or still open for differentiated entry. Use this skill when a user wants to know whether a hot medical research direction is already overworked, whether meaningful whitespace remains, whether major groups have already occupied the obvious claims, and whether the timing window is still open. Always distinguish popularity from true saturation, and distinguish cosmetic novelty from meaningful differentiating entry.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-vector-searchEvidence Insight “Vector database retrieval and evidence-based answering for medical research topics. Use when users need knowledge-base-backed answers about methodology, disease mechanisms, drug effects, clinical research, or research tools. Input is a medical research question; output is a st...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
method-gap-detectorEvidence Insight “Detects methodological gaps across study design, analysis, validation, bias control, reproducibility, and implementation readiness within a biomedical research area. Use this skill when a user wants to identify what current studies are still methodologically missing, which weaknesses are most consequential, and what upgrade path would produce a stronger next-step study. Always separate design gaps, analysis gaps, validation gaps, and reproducibility gaps. Never treat technical complexity as methodological rigor.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
methodology-extractorEvidence Insight “Extract experimental methods from one or more papers into a structured protocol-oriented summary; use when comparing methods across studies or drafting reproducible procedures.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
methods-reverse-engineerEvidence Insight “Reverse-engineers the methods section of a biomedical paper into a structured, reproducible workflow. Use this skill when a user wants to understand how a study was actually executed, extract data sources, inclusion/exclusion logic, preprocessing, analytical sequence, software/tools, validation path, and critical parameters, or build a replication checklist from a paper, abstract, DOI, PMID, title, screenshot, or partial methods text. Do not treat this as generic summarization. Focus on reconstructing the operational method pipeline, surfacing missing reproducibility details, and distinguishing explicitly reported steps from inferred or unresolved ones. Never fabricate references, methods details, identifiers, software versions, parameters, datasets, or validation steps.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
multi-database-literature-collectorEvidence Insight “Collects candidate biomedical literature across multiple databases, adapts search logic by database, preserves source metadata, and organizes results into a structured, screening-ready candidate pool. Always use this skill when a user wants cross-database literature collection, search strategy construction, candidate paper aggregation, or first-pass evidence organization before deduplication, screening, layered reading, or review planning. Requires real and verifiable literature records only. Every formal literature item must include a real link and DOI when available; never fabricate citations, titles, authors, years, journals, abstracts, PMIDs, or DOIs. If a DOI is unavailable or cannot be verified, state that explicitly rather than inventing one.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
novelty-vs-feasibility-assessorEvidence Insight “Assesses whether a medical research topic is worth starting now by separating true novelty from pseudo-novelty, auditing real feasibility under stated resource constraints, and forcing a concrete start / narrow / redesign / stop decision. Always require explicit assumptions and never fabricate references, datasets, resource availability, precedent studies, or publication claims.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
open-access-scoutEvidence Insight “Use when finding open access journals, checking journal policies, or identifying predatory publishers. Helps researchers locate legitimate open access venues and avoid publication scams.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
open-source-license-checkEvidence Insight “Check if referenced bioinformatics software/code licenses allow commercial use (GPL vs MIT, etc.).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
open-targets-dbEvidence Insight “Query the Open Targets Platform to retrieve targets, diseases, or evidence records when you need target-disease association data and evidence-based scores for therapeutic discovery.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
openalex-dbEvidence Insight “Access the OpenAlex database (240M+ scholarly works) for bibliometric analysis, literature search, and citation tracking; use when you need to query works/authors/institutions/concepts without an API key.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
paper-lookupEvidence Insight “Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles. Covers PubMed, PMC (full text), bioRxiv, medRxiv, arXiv, OpenAlex, Crossref, Semantic Scholar, CORE, Unpaywall. Use when searching for papers, citations, DOI/PMID lookups, abstracts, full text, open access, preprints, citation graphs, author search, or any scholarly literature query. Triggers on mentions of any supported database or requests like "find papers on X" or "look up this DOI".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
paper-to-claim-verifierEvidence Insight “Verifies whether a scientific or biomedical claim is actually supported by the cited original papers rather than by citation drift, overstatement, selective citation, or correlation-to-causation inflation. Use this skill whenever a user wants to check whether a repeated statement, slide claim, manuscript sentence, review assertion, or “people often say” scientific conclusion is truly supported by the underlying primary literature. Always separate the claim itself, the cited paper(s), what the paper actually showed, what it did not show, and whether later retellings drifted beyond the original evidence. Never fabricate references, findings, study features, or citation chains.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
patent-claim-mapperEvidence Insight “Use when mapping patent claims to products, analyzing patent infringement, or preparing freedom-to-operate analyses. Compares patent claims against product features for biotech and pharmaceutical IP assessment.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
patent-landscapeEvidence Insight “Use when analyzing biotech patent landscapes, identifying white spaces in pharmaceutical IP, tracking competitor patents, or assessing freedom to operate for drug development. Provides comprehensive patent analysis and strategic insights for life sciences innovation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pathway-introduction-expertEvidence Insight “Generates comprehensive academic introductions for biological pathways, including signaling processes, markers, and inhibitors. Use when the user asks to introduce a pathway, molecule, or gene.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pdb-databaseEvidence Insight “Access the RCSB Protein Data Bank (PDB) to search, download, and programmatically retrieve 3D macromolecular structures and metadata; use when you need structure discovery (text/sequence/3D similarity) or automated structural data ingestion for structural biology and drug discovery workflows.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pdf-extract-experimental-materialsEvidence Insight “Extract experimental materials and instrument information from PDFs (or PDF-derived text/Markdown) into three CSV tables; use when a paper/report contains sections like Materials and Methods, Key Resources Table, Reagents, Antibodies, Consumables, Software, Equipment, Instruments, or Reagent Preparation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
phenotype-introductionEvidence Insight “Expert system for generating comprehensive biomedical phenotype introductions with structured academic content. Use when users request detailed explanations of cellular phenotypes including concept, mechanism, regulation, and detection methods in Chinese academic writing.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pmc-official-downloadEvidence Insight “Download PubMed/PMC literature using officially permitted PMC methods. Whenever the user wants to download PMC full text, batch-retrieve PMC Open Access Subset articles, save full text corresponding to PMID/PMCID locally, or needs to determine whether a PubMed article can be l...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
population-gap-detectorEvidence Insight “Detects overlooked, underrepresented, weakly resolved, or poorly validated populations and subgroups within a biomedical research area so users can identify more precise and meaningful study populations. Always use this skill when the real question is not just what is under-studied, but which populations, strata, or subgroups are missing, thinly represented, superficially analyzed, pooled without resolution, or insufficiently validated in the current evidence base. Focus on meaningful subgroup gaps rather than generic calls for diversity.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
preprint-surveillance-finderEvidence Insight “Tracks the latest preprints and emerging research topics related to your topic across bioRxiv, medRxiv, and arXiv. Use when a user wants to discover what is being published right now before it reaches journals, monitor competitor directions, spot new methodology trends, or get an early-warning scan of a research area. Triggers on phrases like "what's new in X", "latest preprints on Y", "emerging topics in Z", "monitor bioRxiv for", or "what are people working on in this field".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pubchem-database-skillEvidence Insight “Programmatic access to the PubChem database (via PUG-REST API and PubChemPy) for searching chemical compounds, retrieving physicochemical properties, performing structure similarity/substructure searches, and obtaining bioactivity data.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pubmed-databaseEvidence Insight “Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pubmed-search-specialistEvidence Insight “Build complex Boolean query strings for precise PubMed/MEDLINE literature retrieval. Trigger when user needs MeSH term mapping, Boolean query construction, advanced PubMed filters, citation searching, systematic review search strategy, or clinical query optimization.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pubmed-topic-recommendEvidence Insight “Generate ~5 actionable research topic recommendations by querying PubMed E-utilities; use when a user provides a research direction/constraints and needs evidence-backed topic ideas quickly.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pytdcEvidence Insight “Therapeutics Data Commons (PyTDC) for AI-ready therapeutic ML datasets and benchmarks; use it when you need standardized dataset loading, meaningful splits (e.g., scaffold/cold-start), and consistent evaluation for ADME/Toxicity/DTI/DDI or molecular optimization.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
rare-disease-hpo-mapperEvidence Insight “Map patient symptoms to Human Phenotype Ontology terms for gene diagnosis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
rct-bias-assessment-rob2Evidence Insight “Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report. Use when you need to assess the quality of a clinical trial paper or evaluate risk of bias.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
reactome-skillEvidence Insight “Query the Reactome REST API for pathway content and enrichment analyses; use when you need curated pathway data, reaction details, or overrepresentation results for a gene list.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
reagent-substitute-scoutEvidence Insight “Find validated alternative reagents based on literature citation data.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
reference-finderEvidence Insight “Automatically finds and ranks PubMed references for each sentence in scientific text; use when you need titles, DOIs, and brief recommendation reasons from the PubMed E-utilities API.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
reference-retrieval-skillEvidence Insight “Based on user input, directly find relevant literature or automatically construct PubMed Boolean search queries to retrieve and filter references suitable for citation. Applicable for quickly finding high-quality evidence on specific topics and completing reference lists.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
reference-searchEvidence Insight “Multi-database literature search and search-strategy design that outputs structured, reproducible result lists; use when you need reference retrieval, systematic searching, review topic selection, or to construct a traceable search strategy.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
research-article-weeklyEvidence Insight “Generates a weekly academic literature report based on keywords using PubMed. Use when the user wants to track recent research progress on a specific topic, automatically retrieving, classifying, and summarizing relevant papers from the last 7 days.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
research-hotspot-analysisEvidence Insight “Analyze research hotspots for a disease or topic and recommend representative literature. Use when users need to identify trending directions, topic clusters, or generate hotspot review reports. Input is a disease name or research topic; output is a structured hotspot analysis report and representative literature list.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
research-paper-downloaderEvidence Insight “Download academic papers from open-access sources when the user provides a DOI/arXiv ID or requests a keyword-based paper search, and return the saved PDF path.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
result-reliability-checkerEvidence Insight “Assesses whether study results are trustworthy by auditing design integrity, sample structure, statistical handling, bias control, validation chain, and claim discipline. It identifies where results are robust, fragile, overfit, under-validated, or overclaimed. Always separate reported findings from reliability judgment. Never fabricate references, PMIDs, DOIs, trial identifiers, study features, or validation claims.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
retraction-watcherEvidence Insight “Automatically scan reference lists and check whether cited papers have been retracted, corrected, or flagged; use before submission, review, or evidence synthesis to reduce citation risk.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
scholar-evaluationEvidence Insight “Implements the ScholarEval framework to evaluate scholarly documents; trigger when the user provides a PDF/DOCX/TXT file or pasted text and requests critique, scoring, or quality assessment.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
scientific-critical-thinkingEvidence Insight “Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
scientific-podcast-summaryEvidence Insight “Automatically summarize scientific podcasts like Huberman Lab and Nature.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
scite-databaseEvidence Insight “Access Scite.ai Smart Citations to classify how a paper is cited (supporting, contrasting, mentioning) and assess scientific claims; use it when you need to evaluate a paper’s reliability or its acceptance in the literature.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
sds-msds-risk-scannerEvidence Insight “Extract hazard codes and safety info from chemical safety datasheets.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
semantic-scholar-databaseEvidence Insight “Access the Semantic Scholar Graph API to search papers and retrieve paper/author/citation data when you need literature discovery or citation graph exploration.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
smart-journal-monitorEvidence Insight “Use smart journal monitor for evidence insight workflows that need structured execution, explicit assumptions, and clear output boundaries.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
string-databaseEvidence Insight “Access the STRING database to map identifiers, retrieve protein–protein interaction networks, and run functional/PPI enrichment when you need interaction context for a gene/protein set.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
study-design-identifierEvidence Insight “Identifies the real underlying study design used in a medical or biomedical paper, distinguishes primary and secondary design components when papers are hybrid, and converts the paper into an evidence-aware design label suitable for literature appraisal, evidence grading, and downstream review workflows. Always identify the actual design from what the study did, not from how the authors describe it. Never fabricate references, metadata, or study features.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
systematic-review-screenerEvidence Insight “Automated abstract screening tool for systematic literature reviews with PRISMA workflow support.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
target-novelty-scorerEvidence Insight “Score the novelty of biological targets through literature mining and.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
tooluniverse-clinical-trial-matchingEvidence Insight “AI-driven patient-to-trial matching for precision medicine and oncology. Given a patient profile (disease, molecular alterations, stage, prior treatments), discovers and ranks clinical trials from ClinicalTrials.gov using multi-dimensional matching across molecular eligibility...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
tooluniverse-literature-deep-researchEvidence Insight “Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction. Creates a detailed report with mandatory completeness checklist, biological model synthesis, and testable hypotheses. For biological targets, resolves offic...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
topic-evidence-mapperEvidence Insight “Rapidly maps the evidence landscape around a medical topic by organizing major research streams, target populations, endpoints, methods, evidence density, and thin areas. Use this skill BEFORE medical-research-gap-finder — it provides the structured landscape that makes formal gap analysis more rigorous. Do not use for formal gap identification, study design, or protocol planning directly.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
translational-gap-analyzerEvidence Insight “Assess translational gaps between preclinical models and human diseases.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
uniprot-databaseEvidence Insight “Direct REST API access to UniProt for protein search, entry retrieval, and identifier mapping; use when you need programmatic UniProtKB queries or cross-database ID conversion.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
unmet-clinical-need-extractorEvidence Insight “Extracts concrete unmet clinical needs from guidelines, reviews, real-world studies, and clinical-practice evidence. Use this skill when a user wants to turn broad medical research value into specific clinical pain points such as weak early detection, poor risk stratification, treatment-response heterogeneity, monitoring gaps, diagnostic delay, undertreatment, overtreatment, or implementation failure. Always ground unmet-need claims in retrieved evidence and distinguish true care gaps from generic statements of importance.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
unstructured-medical-text-minerEvidence Insight “Mine unstructured clinical text from MIMIC-IV to extract diagnostic logic.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
variant-annotationEvidence Insight “Query and annotate gene variants from ClinVar and dbSNP databases. \n\.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
venue-templatesEvidence Insight “Venue-specific LaTeX templates, formatting requirements, and submission guidelines for journals, conferences, posters, and grants—use when a target venue imposes strict layout, page limits, anonymization, or agency compliance rules.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
zinc-databaseEvidence Insight “Access the ZINC (230M+ purchasable compounds) database when you need to look up compounds by ZINC ID/SMILES, run similarity/analog searches, or download 3D ready-to-dock structures for virtual screening and drug discovery.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
academic-cv-generatorOther “Generate structured academic CVs from free-form Chinese/English text and export to Word (.docx). Use this skill when you are asked to organize, generate, or optimize an academic CV (e.g., publications/projects/awards) into a consistent, formatted document with uniform-colored section headers and optional bilingual output.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
academic-norm-reviewOther “Detects content similarity, verifies standardized citations and abbreviations, and flags potential academic integrity risks; use it before submission, during academic writing QA, or for compliance reviews.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
academic-poster-generatorOther “Complete workflow for generating academic research posters from PDF literature; use when you need to extract paper content from PDFs and produce a LaTeX-based poster (beamerposter/tikzposter/baposter) with mandatory figure generation and a final rendered HTML deliverable.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
adaptyvOther “Cloud laboratory platform for automated protein testing and validation; use when you have designed protein sequences and need wet-lab experimental validation (e.g., binding, expression, thermostability, enzyme activity) and API-based submission/status/result retrieval.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
api-design-principlesOther “Principles and checklists for designing and reviewing REST and GraphQL APIs; use when defining or evaluating API contracts (endpoints/schemas), naming, error models, pagination, versioning, and REST vs. GraphQL trade-offs.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
article-format-adjustmentOther “Adjust academic paper formatting and convert between DOCX/LaTeX/Markdown when you need to meet a journal or school template requirement.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
benchling-integrationOther “Integrate with the Benchling R&D platform when you need to programmatically manage registry entities, inventory, ELN entries, workflows, events, or data warehouse analytics via API/SDK.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
bianqueOther “Evidence-based medical knowledge and research mentor grounded in the Bian Que tradition. Covers clinical reasoning, diagnostic thinking (望闻问切), pharmacology, pathology, differential diagnosis, medical literature appraisal, and the philosophy of early intervention. Trigger whenever users ask about medicine, clinical science, drugs, disease mechanisms, diagnosis, lab interpretation, treatment comparison, or health sciences. Even without explicit research framing, trigger on any topic touching disease, therapeutics, or clinical decision-making. Part of the AIPOCH Medical Research Skill Hub.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
bib-formatterOther “Convert reference lists and in-text citations between RIS, BibTeX, plain text, and CSL-JSON, triggered when you need to unify bibliography/citation styles before journal submission or compare before/after formatting differences.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
bibliographyOther “Classifies and organizes literature by theme, method, and conclusion; use when you need to batch-read a folder of PDF/MD/DOCX/TXT files and output a structured CSV for literature reviews and annotation management.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
biodbnet-apiOther “Access bioDBnet REST services for biological identifier conversion, pathway retrieval, and ortholog mapping. Use when you need to convert gene/protein IDs, find pathways, or retrieve biological annotations via bioDBnet.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
bmi-bsa-calculatorOther “Calculate Body Mass Index (BMI) and Body Surface Area (BSA) for clinical assessment, obesity screening, and chemotherapy dosing. Supports multiple BSA formulas (DuBois, Mosteller, Haycock), WHO weight classification, pediatric calculations, and metric/imperial input.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
brainstormingOther “Creative exploration and brainstorming; use it when you need to clarify goals/constraints, explore multiple options, and converge on a direction before implementation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
buffer-calculatorOther “Calculate precise buffer recipes with accurate mass and volume measurements for molecular biology and biochemistry. Supports PBS, RIPA, and TAE with concentration scaling, stock solution preparation, pH adjustment guidance, and step-by-step protocols.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
chart-style-unifierOther “Batch-unify typography (font family, size, italics) for Word table cells and embedded charts; use when you need consistent formatting across theses/reports without changing body text.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
chemical-storage-sorterOther “Sort laboratory chemicals into safe storage groups by hazard classification (acids, bases, oxidizers, flammables, toxics). Identifies incompatible pairs, generates storage plans with warnings, and supports OSHA/NFPA compliance for lab safety.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
chemical-structure-converterOther “Convert between IUPAC names, SMILES strings, molecular formulas, and common names for chemical compounds. Supports SMILES validation, batch processing, structure standardization, and cheminformatics database preparation for drug discovery workflows.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
clinic-sample-sizeOther “Unified tool for calculating sample sizes for Diagnostic, Efficacy, Etiology, and Prognosis clinical studies. Supports various statistical methods (Sensitivity/Specificity, Log-rank, Chi-square, EPV, etc.).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinical-diagnostic-reasoningOther “Identify and counteract cognitive biases in medical decision-making through systematic error analysis and contextual algorithm application. For diagnostic reasoning, treatment decisions, and” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinical-reportsOther “Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory complianc...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
co-tank-monitorOther “IoT monitoring simulation to predict CO2 tank depletion and prevent weekend gas outages in cell culture facilities. Monitors cylinder pressure, calculates consumption rates, provides early warnings, and supports automated scheduling via cron.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cold-chain-risk-calculatorOther “Calculate temperature excursion risks for cold chain transport. Assesses route risk, packaging suitability, and monitoring requirements for biological samples and pharmaceuticals requiring controlled-temperature shipping.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
conference-tweet-generatorOther “Generates academic conference tweets and summaries by filtering abstracts, translating content, and creating engaging titles. Use when you need to process conference abstracts into social media content.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
conflict-of-interest-checkerOther “Check for co-authorship and institutional conflicts between authors and suggested reviewers to support peer review integrity. Coauthorship and institutional conflict detection supported.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
content-proofreadingOther “An academic proofreading skill for Chinese/English manuscripts, triggered when you need automated checks for spelling, grammar, terminology consistency, and formatting before submission.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
datamolOther “A Pythonic wrapper around RDKit with simplified interfaces and sensible defaults. Preferred for standard drug discovery workflows including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformer generation, and parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
date-calculatorOther “Calculate medical date windows including gestational age, estimated delivery dates, and follow-up visit scheduling. Produces structured JSON output for clinical research and trial coordination workflows.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
dicom-anonymizerOther “De-identify DICOM medical images by removing PHI tags for research sharing, with audit logging and study-linkage preservation support.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
docx-feedback-trackerOther “Automatically detect DOCX track-changes history, version rounds, and author feedback to generate a Markdown modification explanation file when you run it on one or more DOCX versions.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
dpi-upscaler-checkerOther “Check if images meet 300 DPI printing standards, and intelligently restore blurry low-resolution images using AI super-resolution technology.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
ebm-calculatorOther “Evidence-Based Medicine diagnostic test calculator. Computes sensitivity, specificity, PPV, NPV, likelihood ratios, NNT, and pre/post-test probability.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
equipment-maintenance-logOther “Track lab equipment calibration dates and send maintenance reminders for pipettes, balances, centrifuges, and other instruments. Validates date formats and supports update/delete operations.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
experiment-detail-comparatorOther “Compare experimental method details between two Zotero PDF papers, identify protocol differences (ratios, dosages, timing, conditions), search supporting literature to explain why they differ, and generate an HTML report. Use when you need a parameter-level comparison of two methods and evidence-backed reasons for discrepancies.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
expert-interview-generatorOther “Generates a full expert interview article including introduction, Q&A body, and summary based on interview questions and expert background. Use when you have interview questions and an expert profile and need a polished article.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
expert-interview-topicsOther “Generates professional interview titles and questions based on expert background and topic. Provides a structured workflow for interview preparation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
file-managementOther “Organize, back up, compress, split, and merge files/folders using rule-driven plans; use when you need safe previews, conflict handling, and verification before executing file operations.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
file-searchOther “Perform fast file name and content searches with ripgrep (rg); use it when you need to locate files by glob/regex, find keywords across directories, or replace common find/grep workflows.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
file-security-toolkitOther “Encrypt/decrypt local files, redact sensitive information in documents, and validate password strength when handling private data or preparing files for sharing.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
fulltext-fetcherOther “Fetch and save the original HTML of scientific literature webpages when given a URL, DOI, or PubMed PMID (triggered when you need archival-grade page HTML for downstream parsing or review).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
hippocratesOther “Evidence-based medical knowledge and research mentor. Trigger this skill when users ask any question related to medicine, clinical science, pharmacology, pathology, epidemiology, or health sciences. Covers: disease mechanisms, drug actions and interactions, differential diagnosis reasoning, clinical guideline interpretation, medical literature appraisal (including GRADE assessment), treatment comparisons, lab and imaging interpretation, public health analysis, and medical terminology. Even if the user doesn't explicitly say "evidence-based" or "medical research," trigger this skill whenever the topic touches health, disease, drugs, or therapeutics. Part of the AIPOCH Medical Research Skill Hub.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
html-to-pdfOther “Convert HTML files or URLs to high-fidelity PDFs using Puppeteer; auto-detects or forces RTL for Hebrew/Arabic when RTL content is present.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
icd10-cpt-coding-assistantOther “Parse clinical notes and recommend ICD-10-CM diagnosis codes and CPT procedure codes with confidence scoring. Cross-references diagnoses with procedure codes, generates alternatives for medium-confidence matches, and produces structured coding reports with human-review flags.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
id-photo-toolOther “Replace an ID photo background color (blue/white/red) and/or add a configurable text watermark when you need compliant ID-photo variants from local JPG/PNG files.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
image-ocrOther “Extract text from images with Tesseract OCR; use it when you need to recognize text from PNG/JPEG/TIFF/BMP images, select a language model, or run OCR via natural-language requests (e.g., "Interpret the image at C:\path\image.png").” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
image-processingOther “Batch-convert and compress local images with Pillow; use when you need an offline, scriptable pipeline for directory-based processing.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
imagegenskillOther “Generate renderable, scientific-style SVG graphics directly from natural-language requirements (no image models). Use when users ask for an image/picture/scientific diagram/visualization poster or explicitly request SVG output for web-embeddable vector graphics.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
iso-certificationOther “A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS. Use when you need to perform a documentation gap analysis, draft or update a Quality Manual, create required procedures/work instructions, build Medical Device Files (MDF), interpret ISO 13485 clauses, or identify missing documents for certification (often triggered by ISO 13485, QMS certification, FDA QMSR, EU MDR, or quality system documentation requests).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
journal-recommenderOther “Recommend academic journals based on manuscript topic, abstract, and impact factor expectations. Use when the user wants to find suitable journals for their research manuscript, especially when they provide a topic, abstract, and target Impact Factor.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
knowledge-base-searchOther “Search and locate relevant content within a local knowledge base (files, indices, or PageIndex). Use when you need verifiable citations (file + page/paragraph) to support answers from local sources.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
kv-designOther “Generate professional Key Visual (KV) design proposals and images; use when you have a slogan/copy and a marketing scenario but need a clear visual direction and a ready-to-generate image prompt.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
lab-inventory-predictorOther “Predict depletion time of critical lab reagents based on historical usage frequency, and automatically generate purchase alerts when stock falls below safety thresholds.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
lab-prep-calculationsOther “Perform pre-experiment calculations and generate step-by-step preparation protocols for dilutions, solution preparation, dissolution, and % concentrations when planning formulations and lab prep workflows.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
lab-result-interpretationOther “Transforms biochemical lab test results into clear, patient-friendly explanations. Covers blood routine, lipid panel, liver/kidney function, thyroid, electrolytes, and inflammation markers. Flags critical values, classifies severity, and generates structured interpretation rep...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
learning-tutoringOther “Learning tutoring planning and content production skill for creating study plans, generating exercises, writing answer explanations, and providing review/adjustment guidance; triggered by requests like “study plan”, “exercise set/question bank”, “answer analysis”, “error analysis”, “exam prep plan”, or “spaced/periodic review schedule”.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
literature-managementOther “Import local literature into a managed library; trigger when you need offline deduplication, tagging, and a searchable index.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
literature-statisticsOther “Generate statistics for publication-year and journal distributions from local references or PDFs; use when you need standardized Year/Journal tables and a summary without any network access.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
literatureimages-interpretationOther “Interpret figures in academic papers and their captions when the input is a PDF-to-Markdown document with page markers and image links, producing a structured Markdown report for extracting variables, trends, and conclusions.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
market-research-report-generatorOther “Generates professional market research reports by analyzing business intent, decision levels, and conducting multi-source data retrieval (Web, PubMed, Clinical Trials).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
markitdownOther “Convert files and Office documents into clean Markdown when you need LLM-friendly, token-efficient text (e.g., for summarization, search, RAG ingestion, or dataset preparation).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-case-interpreterOther “Generates compliant medical case report articles for WeChat.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-case-report-generatorOther “Generates a patient-friendly medical case report tweet from case images and disease name. Use when the user provides a medical case image and wants a structured report or tweet.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-unit-converterOther “Convert medical laboratory values between units (mg/dL to mmol/L, etc.) with formula transparency and clinical reference ranges. Supports glucose, cholesterol, creatinine, and hemoglobin conversions.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medication-reconciliationOther “Compare patient pre-admission medication lists with inpatient orders to automatically identify omitted or duplicated medications and improve medication safety.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meeting-assistantOther “Extracts key meeting information in chronological order and outputs decisions and action items; use when you need meeting minutes, action tracking, or project sync notes from transcripts or raw notes.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meeting-minutes-generatorOther “Generates structured meeting minutes from text transcripts. Use when the user provides text content and wants a structured summary with a signature.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
mendelOther “Gregor Mendel — genetics mentor, patient experimenter, and gardener-monk. Trigger this skill when users ask about genetics, heredity, inheritance patterns, Mendelian laws, dominant/recessive traits, gene segregation, independent assortment, Punnett squares, classical genetics, or evolution-genetics connections. Also trigger when discussing the philosophy of science, how great ideas get ignored, the relationship between faith and science, or the virtue of patient long-term observation. Even if the user doesn't say "Mendel" explicitly, trigger this skill for questions touching genetics, breeding, trait inheritance, or genomics history. Part of the AIPOCH Science Mentor Skill Hub.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-search-builderOther “Medical literature search strategy generator. Given a user's natural-language description (e.g., meta-analysis topic, PICOS elements, research question), automatically extract medical entities (disease, intervention, population, outcomes) and generate professional search queries for seven major databases (PubMed, Cochrane, Embase, Web of Science, CNKI, Wanfang, VIP). Useful for developing search strategies for systematic reviews and meta-analyses.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
microscopy-scale-bar-adderOther “Add accurate, publication-ready scale bars to microscopy images given pixel-to-unit calibration data.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
mindmapOther “Generate mindmaps locally/offline with native HTML/CSS/JS (no external libraries); use when you need to parse Plain Text node structures or map LLM outputs into an on-device visualization.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
mindmap-helperOther “Organize requirements into Markdown/JSON mind map structures; use when you need a hierarchical outline for mind map tools (e.g., XMind, ProcessOn, FreeMind) or for documentation planning.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
mindmap-html-generatorOther “Generate offline interactive mindmap HTML and convert Markdown, outlines, meeting notes, chapter structures, or JSON trees into markmap-compatible format. Use when organizing long text into mindmaps, converting meeting notes to mindmap pages, generating final HTML via markmap-cli, or adding browsable mindmaps to deliverables.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
multi-panel-figure-assemblerOther “Assemble 6 sub-figures (A–F) into a high-resolution composite figure with consistent labels, padding, and publication-ready DPI.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Limited Releasesource
multi-source-news-writerOther “Integrates multiple news sources into a single, cohesive press release using an inverted pyramid structure and AP style. Use when you have raw news content and a topic, and need a professional press release.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
note-summarizerOther “Organize study notes into a structured knowledge-point outline and export to a .docx summary when you need a shareable, hierarchical document from Word/PPT/Text/Markdown inputs.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
paper-tweet-generatorOther “Generates a structured reading tweet from an academic paper (PDF, Word, or Text), highlighting specific product advantages. Use when the user wants to turn a document into a social media post or reading summary.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
patient-consent-simplifierOther “Simplifies informed consent documents into patient-friendly language while maintaining regulatory compliance. Readability assessment targeting 6th-8th grade level, risk/benefit clarification in table format, and FDA 21CFR50/ICH-GCP/HIPAA compliance validation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pdf-extractOther “Extract PDF selectable text and full-page or segmented page images (including tables) into Markdown with per-page headings and image links; use when you need both readable text and page visuals for PPT creation, review, or analysis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pdf-pptOther “Create literature-report PPTX decks from PDF papers. Use when you must extract a paper’s metadata, summarize the study, interpret Results/Figures/Tables, and generate slides with 1:1 figure-to-text alignment and layout rules (triggered by requests like “PDF to PPT”, “literature report slides”, or “turn this paper into a presentation”).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pdf-processorOther “Perform basic local PDF operations (merge, split, extract pages/text/tables, create) when users request offline PDF processing without external services.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pdf-to-ppt-packOther “Convert research paper PDFs into literature-report PPTX decks using a fully offline workflow (extract text/figures, map captions, summarize findings, and generate slides). Use when you need to turn a PDF into a presentation deck, especially for scientific articles with figures and tables.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubsource
phi-prompt-guardOther “Runtime, prompt-time behavioral guardrail that helps reduce PHI exposure in LLM-assisted workflows by detecting PHI-bearing prompts, avoiding unsafe tool actions that would pull more PHI in, and redirecting users toward de-identified or synthetic inputs. Use when the user is about to paste, query, or read clinical/patient data, or when an action (DB query, file read, tool output) may pull PHI into the conversation. Honors a [PHI-OK] attestation for synthetic / test data.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
plan-generatorOther “Automatically generates a Markdown final-exam review plan or lab experiment schedule when you provide a date range, tasks/items, and available daily hours (via interactive prompts or a one-time JSON input).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
plotlyOther “Interactive visualization library for Python. Use it when you need hover tooltips, zoom/pan, selection, animations, or charts embeddable in web pages (e.g., dashboards, exploratory analysis, presentations).” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
postdoc-fellowship-matcherOther “Filter and match postdoctoral fellowship opportunities based on applicant nationality, years since PhD, and research field from a curated database.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
poster-designerOther “Generate professional poster design concepts and optimized image-generation prompts, then automatically run a drawing script to produce the final poster image when a user needs a poster.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pptOther “Create and export PPTX decks using the local HTML/JS PPT framework in `D:\SKILL\project\ppt`. Use this when you need to generate slides from a topic/outline, edit slide content via `projects/*.js`, preview as HTML, or export a `.pptx` without relying on an existing template.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
ppt-masterOther “AI-driven multi-format SVG content generation system. Converts source documents (PDF/DOCX/URL/Markdown) into high-quality SVG pages and exports to PPTX through multi-role collaboration. Use when user asks to "create PPT", "make presentation", "generate PPT", "make slides", or ...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pptx-postersOther “Generate PowerPoint presentations and academic posters from paper abstracts or full paper content, with automatic layout optimization and citation formatting.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pptx-skillOther “Create, edit, and extract content from PowerPoint (.pptx) files; use when you need to generate slides programmatically, update existing decks, or export slide previews.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
reagent-expiry-alertOther “Scan reagent barcodes or IDs, log expiration dates, and generate multi-level alerts before reagent expiry to support laboratory inventory management.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
reproducibility-checkOther “Comprehensive reproducibility tool — audit Methods completeness for replication AND promote open science best practices (pre-registration, FAIR data, code sharing, replication design, reporting transparency); trigger when preparing a manuscript, reviewing methodological comple...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
resubmission-deadline-trackerOther “Track manuscript resubmission deadlines and automatically generate phase-appropriate task breakdowns for academic researchers based on remaining time.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
result-figure-consistencycheckOther “Checks consistency between paper result descriptions and figure legends (text-only) when the input is a PDF-to-Markdown full text containing page breaks (e.g., `## Page XX`) and legend text; outputs a Markdown consistency report and a UTF-8 CSV issue list.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
schedule-managementOther “Local schedule management for adding events, tracking deadlines, generating reminders, and detecting time conflicts when users need offline scheduling with optional popup notifications.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
sci-paper-reviewerOther “Simulates a strict SCI peer-review workflow; trigger when a user uploads or pastes a manuscript (PDF/DOC/DOCX/TXT) and requests an innovation score (1–12) plus experimental-logic vulnerability checks and revision suggestions.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
science-popularization-articleOther “Generates science popularization articles with titles and outlines based on medical topics and style preferences. Invoke when user needs to create medical/science popular content for public education.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
scientific-schematicsOther “Automates publication-quality scientific diagrams (e.g., flowcharts, architectures, pathways) when you need journal/poster-ready visuals from a natural-language description.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
search-pubmedOther “An intelligent tool for precision medical literature search using PubMed's E-utilities API.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
shift-handover-summarizerOther “Generate structured shift handover summaries from EHR records, highlighting critical events, vital sign changes, and pending tasks for incoming clinical staff.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
short-video-script-generatorOther “Generate popular science short video scripts based on topic, duration, and style. Invoke when the user needs to create scripts for short science videos.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
slide-deck-imagesOther “Generate professional slide-deck SVG images (not PPTX/PDF) when users ask to “create slides / slide deck / PPT” and need image outputs.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
soft-article-writerOther “Generates high-quality promotional soft articles with structured outlines, tailored introductions, and optimized titles based on product info and hot topics. Use when you need to write promotional content, "soft articles" (), or marketing copy that integrates product highlights with current trends, news, or industry insights.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
spreadsheet-opsOther “Spreadsheet processing and analysis for CSV/Excel; trigger when users ask to merge/clean tabular data, run statistics, add/edit Excel formulas, apply formatting, generate charts, or force workbook recalculation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
symptom-checker-triageOther “Suggest triage levels (Emergency, Urgent, Outpatient) based on red flag symptoms using a rule-based engine. For AI-assisted decision support only — not a substitute for professional medical diagnosis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
task-reminderOther “Organize scattered tasks into actionable lists and generate daily/weekly/deadline reminder plans when you need a structured schedule and exportable outputs (MD/CSV), with optional system notifications.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
text-format-organizerOther “A local text formatting organizer for biomedical/academic writing; use it when you need to clean whitespace/line endings while preserving Markdown structures or when normalizing .docx/.md/.txt before submission or proofreading.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
text-to-technical-roadmapOther “Converts research text into a Mermaid technical roadmap flowchart. Use when the user provides research proposals, experiment designs, or scientific text and asks for a roadmap or flowchart.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
time-zone-plannerOther “Plan cross-time-zone meeting windows for distributed teams, providing region-by-region local time mappings and tradeoff analysis for scheduling decisions.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
treatment-plansOther “Generate concise (typically 1–4 pages) patient-centered medical treatment plans in LaTeX/PDF when a clinician needs an actionable plan with SMART goals, evidence-based interventions, monitoring, and HIPAA-aware documentation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
uspto-databaseOther “Access USPTO data (Patent Search, PEDS, TSDR, assignments) when you need to query patents/trademarks and retrieve prosecution or status information programmatically.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
vector-text-fixerOther “Fix garbled text in PDF/SVG vector graphics caused by font encoding issues, making files editable in AI tools. Supports batch processing and JSON export for manual correction.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
virtual-patient-roleplayOther “Simulate standardized patient encounters for medical training, supporting OSCE-style history-taking practice, communication skills rehearsal, and educational debriefing.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
waste-disposal-guideOther “Guide for disposing specific chemical wastes into the correct colored waste containers, with safety precautions and regulatory compliance notes.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
word-read-writeOther “Create and read Microsoft Word (.docx) documents. Use this skill when you need to generate reports/letters/templates as .docx or extract readable text from existing .docx files.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
active-comparator-single-soc-faers-safety-comparisonProtocol Design “Generates complete FAERS pharmacovigilance study designs for multi-drug or class-level safety comparison inside one predefined SOC or AE family using active comparators, disproportionality analysis, subgroup characterization, and reviewer-facing evidence control.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
adaptive-trial-simulatorProtocol Design “Design and simulate adaptive clinical trials with interim analyses, decision rules, and operating-characteristic summaries; use when planning adaptive designs or comparing stopping, enrichment, or sample-size re-estimation strategies.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
aim-and-hypothesis-designerProtocol Design “Designs primary aims, secondary aims, and testable hypotheses from broad biomedical research ideas. Use this skill when a user needs to convert a loose study idea into a tighter protocol-framing structure with clear aim hierarchy, hypothesis discipline, and separation between hypothesis-driven and exploratory components. Always keep aims answerable, non-overlapping, and aligned to the intended evidence type and study scope.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
animal-and-cell-validation-plannerProtocol Design “Designs cell-based and animal-based validation plans that translate computational, omics, biomarker, genetic, or clinical findings into experimentally testable validation routes. Always use this skill whenever a user wants to move from an in silico, statistical, or clinical association finding toward wet-lab validation using cell systems, organoid-like systems, xenograft or genetically relevant animal models. It should define the exact claim to test, separate mechanism-testing from association-support and translational-support goals, choose the best-fit model family, specify perturbation strategy, readouts, controls, sequencing of experiments, and four workload configurations (Lite / Standard / Advanced / Publication+) with one recommended primary plan. Never fabricate model availability, reagent availability, species relevance, assay feasibility, phenotype penetrance, expected effect sizes, validation success, or literature references.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
basic-research-designProtocol Design “A biomedical research topic designer that generates progressive experimental subtitles and detailed research outlines based on a given subject. Use when the user wants to design a research proposal, outline experiments for a topic, or structure a biomedical study.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
bidirectional-multi-phenotype-mr-research-plannerProtocol Design “Generates complete bidirectional multi-phenotype Mendelian randomization research designs from a user-provided exposure family and outcome family. Always use this skill whenever a user wants to design, plan, or build a genome-wide causal-inference study based on publicly available GWAS summary statistics, especially when the article logic includes multiple exposures, multiple outcomes or subtypes, bidirectional MR, IV filtering, IVW as the main estimator, weighted median / MR-Egger / MR-PRESSO sensitivity analyses, leave-one-out testing, heterogeneity / pleiotropy checks, and multiple-testing control with FDR. Covers five study patterns (single-family bidirectional MR, multi-phenotype screening MR, subtype-resolved MR, phenome-style bidirectional causal map, mechanism-prioritized MR follow-up) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
bulk-omics-integrative-plannerProtocol Design “Designs complete integrated research plans for bulk transcriptomics, proteomics, metabolomics, and related omics from a user-provided biomedical direction. Always use this skill whenever a user wants to design, scope, or structure a bulk multi-omics or single-omics-plus-clinical study — including disease-focused, mechanism-focused, biomarker-focused, stratification-oriented, or translational projects. It should define the research question, choose the best-fit study pattern, recommend example datasets as reference candidates only, specify the core analysis modules and method choices, propose a validation ladder, and output four workload configurations (Lite / Standard / Advanced / Publication+). Never fabricate datasets, accession numbers, sample counts, metadata completeness, cohort availability, assay coverage, literature references, PMIDs, DOIs, or validation status. Always include the mandatory Dataset Disclaimer immediately before any workflow section that mentions datasets or public resources.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
case-control-study-plannerProtocol Design “Design a structured case-control study framework with explicit source population logic, control selection rules, matching decisions, exposure measurement planning, and bias-control checkpoints.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinic-research-designProtocol Design “Generates a structured prompt framework for clinical study protocols. Supports Diagnostic, Efficacy, Etiology, and Prognosis studies. Calculates sample size and provides logic guides for LLMs.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinical-cohort-protocol-designerProtocol Design “Designs retrospective or prospective clinical cohort study protocols for biomedical and clinical research. Always use this skill when the user needs a cohort-based study plan rather than a general study idea, evidence summary, or mechanistic experiment design. Focus on cohort appropriateness, enrollment logic, baseline time-zero definition, follow-up structure, endpoint definition, variable collection, confounding control, and a coherent primary statistical analysis line. Do not invent data availability, follow-up completeness, outcome ascertainment quality, sample size adequacy, or causal interpretability.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
clinical-trial-protocol-skillProtocol Design “Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical study", "Research similar trials for [intervention]", or when developi...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
comorbidity-common-immune-biomarker-research-plannerProtocol Design “Generates complete comorbidity-oriented shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction. Use when a study links two clinically related diseases through shared DEGs, enrichment, PPI hub genes, machine-learning feature selection, public diagnostic validation, gene-regulatory networks, immune infiltration, and optional downstream follow-up. Covers five study patterns (shared-DEG discovery, hub-gene prioritization, machine-learning biomarker selection, immune/regulatory interpretation, multi-layer validation) and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
comparative-network-toxicology-shared-mechanism-reference-groundedProtocol Design “Generates complete comparative network-toxicology research designs from a user-provided exposure pair, shared toxic phenotype, and validation direction. Use when a study centers on two related exposures under one outcome and needs target collection, shared-vs-specific target decomposition, enrichment, PPI hub prioritization, docking, optional transcriptomic cross-checks, and conservative mechanistic synthesis. Covers five study patterns and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
confounder-and-bias-control-plannerProtocol Design “Plans confounder control, variable adjustment logic, and bias mitigation strategies at the protocol stage for clinical, epidemiologic, translational, observational, and biomarker studies. Always use this skill when a user needs to identify major confounders, decide which variables should or should not be adjusted for, compare matching/stratification/weighting approaches, anticipate selection or measurement bias, or pressure-test a study design before execution. Focus on bias sensing, causal structure awareness, variable-role classification, and critical design review rather than generic statistical advice.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
conventional-non-oncology-hub-gene-research-plannerProtocol Design “Generates complete conventional non-oncology bioinformatics research designs from a user-provided disease context, process-related gene family or biological theme, and validation direction. Use when a study centers on multi-dataset bulk transcriptome integration, DEG analysis, process-gene intersection, enrichment analysis, GSEA, PPI hub-gene prioritization, TF/miRNA regulatory networks, ROC-based biomarker evaluation, and immune infiltration analysis. Covers five study patterns (process-DEG discovery, enrichment/GSEA interpretation, hub-gene prioritization, regulatory-network and immune interpretation, multi-layer public validation) and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
conventional-oncology-hub-gene-research-plannerProtocol Design “Generates complete conventional oncology bulk-transcriptome biomarker and hub-gene research designs from a user-provided cancer type and study direction. Always use this skill whenever a user wants to design, plan, or build a tumor bioinformatics study centered on differential expression, prognostic filtering or risk modeling, PPI-based hub-gene prioritization, diagnostic/prognostic evaluation, clinical association, immune infiltration context, methylation context, and optional tissue or cell validation. Covers five study patterns (signature-first prognostic workflow, hub-gene-first biomarker workflow, hybrid signature-to-hub workflow, immune-context biomarker workflow, translational validation workflow) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
cross-disease-shared-biomarker-network-research-plannerProtocol Design “Generates complete cross-disease shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction. Always use this skill whenever a user wants to design, plan, or build a multi-dataset study linking two related diseases through shared DEGs, enrichment, PPI hub genes, public validation, regulatory-network analysis, immune infiltration, drug-gene interaction screening, and optional qRT-PCR or cell-line validation. Covers five study patterns (shared-DEG discovery, hub-gene prioritization, regulatory-network interpretation, immune/drug follow-up, bioinformatics-plus-validation) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, and a strictly verified reference literature retrieval layer with real references only.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
drug-repurposing-study-plannerProtocol Design “Design evidence-discovery and validation workflows for drug repurposing studies by integrating disease mechanisms, drug-target logic, expression reversal, real-world evidence, and validation routes into a closed-loop study blueprint.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
dual-disease-shared-transcriptome-biomarker-research-plannerProtocol Design “Generates complete dual-disease shared-transcriptome biomarker and hub-gene research designs from a user-provided disease pair and shared-biology direction. Always use this skill whenever a user wants to design, plan, or build a non-oncology two-disease transcriptome study centered on per-disease differential expression, shared-signal intersection or concordance, PPI-based hub-gene prioritization, diagnostic evaluation across both diseases, immune infiltration context, pathway interpretation, and optional orthogonal validation. Covers five study patterns (shared-DEG-first workflow, hub-gene-first shared-biomarker workflow, hybrid shared-biomarker compression workflow, immune-context shared-biomarker workflow, orthogonal validation workflow) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
dual-disease-transcriptomic-ml-plannerProtocol Design “Generates complete dual-disease transcriptomic + machine learning research designs from a user-provided disease pair. Use when users want to identify shared DEGs, common hub genes, cross-disease biomarkers, or shared molecular mechanisms between two diseases using public GEO data. Triggers:"shared biomarker study for two diseases", "dual-disease transcriptomic ML paper", "identify common DEGs between disease A and B", "cross-disease hub gene discovery", "shared DEG + PPI + ROC design", "immune infiltration shared biomarker", or "I want to study disease X and Y together". Always outputs four workload configurations (Lite / Standard / Advanced / Publication+) with a recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, and publication upgrade path.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
endpoint-definition-designerProtocol Design “Designs primary, secondary, and exploratory endpoints for biomedical and clinical research protocols. Always use this skill when a user needs to translate study aims into operational endpoint definitions with event rules, assessment timing, composite logic, interpretability, and protocol-stage auditability. Focus on endpoint precision, feasibility, clinical meaning, ambiguity reduction, and implementation readiness rather than generic study design advice.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
esmProtocol Design “Toolkit for protein language models (ESM3 for multimodal generative protein design; ESM C for efficient embeddings). Use when you need sequence/structure/function generation or prediction, inverse folding, protein embeddings, or scalable inference via local weights or the Forge API.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
experiment-designProtocol Design “Design scientific experiments including sample size calculation, randomization, control groups, blinding, and study protocols. Covers RCTs, quasi-experiments, factorial designs, A/B tests, survey design, and observational studies. Use when user asks to design an experiment, ca...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
faers-multi-drug-soc-plannerProtocol Design “Generates complete FAERS-based multi-drug single-SOC safety comparison research designs from a user-provided drug set, comparator, and adverse event domain. Always use this skill when users want to compare safety signals across multiple drugs using FAERS or OpenFDA data within one System Organ Class (SOC) or bounded AE domain. Trigger for:"FAERS study comparing drugs within one SOC", "publishable FAERS safety comparison paper", "compare neuropsychiatric adverse events across beta-blockers", "Lite/Standard/Advanced FAERS safety plans", "active-comparator restricted disproportionality", "adjusted ROR logistic regression FAERS", "within-class head-to-head drug comparison", "pharmacovigilance signal comparison", "single-SOC PT-level FAERS design", or any phrasing like "I want to compare drug X and drug Y for adverse events in FAERS" or "build a comparative pharmacovigilance paper". Always output four workload configurations (Lite / Standard / Advanced / Publication+) with a recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, and publication upgrade path.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
faers-pharmacovigilance-disproportionality-research-plannerProtocol Design “Generates complete FAERS-style pharmacovigilance disproportionality research designs from a user-provided drug class, comparator strategy, adverse-event domain, and patient-group stratification. Always use this skill whenever a user wants to design, plan, or build a spontaneous-report safety signal study using FAERS or a similar pharmacovigilance database, especially when the article logic includes product selection, indication-group stratification, MedDRA-based adverse-event extraction, serious-case filtering, suspect-drug and concomitant-exclusion logic, reporting odds ratio analysis, comparator-drug benchmarking, cross-drug comparison, and cautious signal interpretation without causal overclaiming. Covers five study patterns (single-drug disproportionality workflow, multi-drug class comparison workflow, indication-stratified workflow, comparator-controlled signal screening workflow...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
feasibility-aware-study-plannerProtocol Design “Designs a realistic, execution-aware biomedical study version under explicit constraints of samples, time, budget, data access, lab capacity, team skill, and validation resources. Always use this skill when the user has a real study idea, a candidate route, or a partially framed project but cannot assume ideal conditions. If critical feasibility inputs are missing, first clarify what resources are currently available, what resources may be obtainable, and what resources are realistically unavailable. Do not invent access, capabilities, collaborations, or validation resources. Focus first on feasibility-constrained study framing, route narrowing, dependency control, and minimum viable study design.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
generic-phenotype-scoring-research-plannerProtocol Design “Generates complete phenotype-scoring bioinformatics research designs for any disease context and any user-defined phenotype, pathway, process, signature, or molecular program. Use when a study centers on gene-set or feature-set definition, intersection with DEGs or candidate features, phenotype scoring, feature selection, diagnostic or stratification assessment, immune or cellular-resolution interpretation, network analysis, and optional orthogonal validation. Covers five study patterns (signature discovery, phenotype scoring, feature selection, immune/cellular interpretation, multi-layer validation) and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
hypogenicProtocol Design “Automated LLM-driven hypothesis generation and testing for tabular datasets; use when you need systematic exploration of empirical patterns (e.g., fraud detection, content analysis) and want to combine literature insights with data-driven hypothesis evaluation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
hypothesis-generationProtocol Design “Structured scientific hypothesis formulation from observations; use when you have experimental observations or preliminary data and need testable hypotheses with predictions, mechanisms, and validation experiments.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
inclusion-criteria-genProtocol Design “Generate and optimize clinical trial subject inclusion/exclusion criteria to balance scientific rigor with recruitment feasibility.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
inclusion-exclusion-criteria-builderProtocol Design “Builds clear, executable, and auditable inclusion and exclusion criteria for biomedical and clinical research protocols. Always use this skill when a user needs to translate a target population into operational screening rules tied to chart fields, time windows, tests, procedures, prior therapies, exclusions, and reviewable edge cases. Focus on protocol-stage precision, ambiguity reduction, auditability, and screening reproducibility rather than generic study design advice.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
inplasy-registration-helperProtocol Design “Assists researchers in generating INPLASY registration content for meta-analyses from a title and optional protocol. Use when the user wants to draft a INPLASY registration form.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
mechanism-to-validation-plannerProtocol Design “Extends a mechanistic or association-level biomedical finding into a staged validation pathway that moves from descriptive evidence toward stronger functional support, mechanistic specificity, and clinical relevance. Use this skill when a user has a pathway, biomarker, cell-state, target, mechanism, or association finding and needs to decide what should be validated next, in what order, and which evidence layers are necessary versus optional. Do not default to maximal validation stacks. Build a structured validation ladder with a primary route, stronger upgrade route, and optional extensions.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-research-algorithm-matcherProtocol Design “Matches a user’s biomedical research direction, disease problem, study aim, data modality, and resource constraints to the most relevant recent algorithms and method papers. Always search real recent algorithm literature first, prioritize the last 12 months, expand to 1–3 years only when needed, and add canonical baselines only when necessary. Every formal algorithm recommendation must include the verified primary method paper, plus published downstream papers that actually cite/use the algorithm when such papers are found, with DOI when available. Never fabricate papers, algorithm names, authors, journals, years, DOI, PMID, links, or benchmark claims. If no directly verified algorithm paper is found, say so explicitly.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
medical-research-gap-to-study-plannerProtocol Design “Converts an audited medical research gap into a complete, structured, gap-traceable study design. Always use this skill whenever a user already has one or more candidate research gaps and wants to transform them into an executable biomedical research plan rather than re-run broad topic ideation. Covers six gap-to-design patterns (evidence-completion, mechanism-resolution, cell-state/context-mapping, translation-bridge, causality-upgrade, population/stage-specific) and always outputs one recommended primary protocol, a gap-to-design dependency map, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, and verified design-support literature rules. Never fabricate references. Preserve claim-evidence discipline and do not replace a topic-specific gap with a generic workflow.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
mendelian-randomization-protocol-designerProtocol Design “Generates complete Mendelian randomization study designs from a user-provided exposure and outcome direction. Always use this skill whenever a user wants to design, plan, or build a Mendelian randomization study — even if phrased as "help me write a paper on X", "design an MR study for Y", or "I want to test whether A causally affects B using GWAS". Covers core two-sample MR design, optional bidirectional follow-up, optional multivariable MR, IV selection logic, ancestry alignment, harmonization, IVW as the default primary estimator, weighted median / MR-Egger / MR-PRESSO / leave-one-out sensitivity analyses, Steiger directionality, heterogeneity / pleiotropy checks, and explicit claim-boundary control. Always outputs four workload configs (Lite / Standard / Advanced / Publication+) with a recommended primary plan, stepwise workflow, method rationale, validation ladder, figure plan, minimal executable version, and strictly verified literature guidance with no fabricated references.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
meta-protocol-writerProtocol Design “Generates a PROSPERO-compliant Meta-analysis protocol based on Title and PICOS. Use when the user wants to write a protocol for a systematic review or meta-analysis.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
mr-scrna-research-plannerProtocol Design “Generates complete Mendelian Randomization + single-cell transcriptomics (scRNA-seq) research designs from a user-provided direction. Always use this skill whenever a user wants to design, plan, or build a study combining MR and single-cell data — even if phrased as "help me write a paper on X", "design a bioinformatics study for Y", or "I want to study Z using MR and scRNA". Covers five study patterns (mechanism gene-set, key-cell, candidate-gene reverse validation, exposure-disease-cell triangulation, translational biomarker) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, and a strictly verified reference literature retrieval layer with real references only.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
multi-omics-clinical-integration-plannerProtocol Design “Designs complete research plans that integrate clinical variables with multi-omics data from a user-provided biomedical direction. Always use this skill whenever a user wants to design, scope, or structure a study that combines clinical variables with transcriptomics, proteomics, metabolomics, epigenomics, or related omics layers for mechanism interpretation, biomarker development, risk stratification, treatment-response analysis, or translational use. It should define the clinical use case, alignment across data layers, feature-reduction and fusion logic, modeling route, mechanism-interpretation layer, validation ladder, and four workload configurations (Lite / Standard / Advanced / Publication+). Never fabricate datasets, accession numbers, sample counts, metadata completeness, platform coverage, literature references, PMIDs, DOIs, or validation status. Always include the mandatory Dataset Disclaimer immediately before any workflow section that mentions datasets or public resources.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
network-tox-docking-research-plannerProtocol Design “Generates complete network toxicology + molecular docking research designs from a user-provided toxicant and disease/phenotype. Always use this skill when users want to investigate how an environmental toxicant, endocrine disruptor, heavy metal, food contaminant, pharmaceutical residue, or consumer product chemical may contribute to a disease through shared molecular targets, hub genes, pathways, and docking evidence. Trigger for:"network toxicology study", "toxicology mechanism paper", "target prediction + PPI + docking", "environmental pollutant and disease mechanism", "hub genes and docking for toxicant", "Lite/Standard/Advanced toxicology plan", "CTD + SwissTargetPrediction + GeneCards + STRING", "CB-Dock2 docking study", "triclosan/BPA/cadmium/PFAS + disease". Also triggers for Chinese phrasings:"网络毒理学研究设计"、"毒物机制论文"、"靶点预测+PPI+对接"、"环境污染物与疾病机制". Trigger even for casual phrasings like "I want to study how chemical X affects disease Y" or "help me design a toxicology paper". Always output four workload configurations (Lite / Standard / Advanced / Publication+) with a recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, and publication upgrade path.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
nhanes-clinical-retrospective-biomarker-research-plannerProtocol Design “Generates complete NHANES-style cross-sectional epidemiology + retrospective clinical validation research designs from a user-provided disease and biomarker direction. Always use this skill whenever a user wants to design, plan, or build a population-level biomarker association study using NHANES or similar survey datasets, especially when the article logic includes disease definition, biomarker formula derivation, multivariable logistic regression, restricted cubic spline analysis, subgroup stability testing, and a secondary hospital-based retrospective validation cohort. Covers five study patterns (cross-sectional association, dose-response / RCS, subgroup-stability, NHANES + retrospective validation, preliminary screening-performance) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
non-tumor-mechanism-guided-diagnostic-ml-research-plannerProtocol Design “Generates complete conventional non-oncology diagnostic machine-learning research designs from a user-provided disease context, optional mechanism theme, and validation direction. Use when a study centers on disease-vs-control transcriptome comparison, optional mechanism-gene restriction, feature shrinkage, diagnostic model construction, ROC / calibration / DCA evaluation, interpretation layers, and orthogonal validation. Covers five study patterns and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
non-tumor-ml-research-plannerProtocol Design “Generates complete non-tumor biomedical machine learning research designs from a user-provided research direction. Always use this skill when users want to plan bioinformatics + ML papers for non-cancer diseases (metabolic, cardiovascular, kidney, inflammatory, autoimmune, infectious, neurological, endocrine, wound healing, chronic multifactor), design diagnostic biomarker studies, combine GEO datasets with feature selection and ML modeling, or generate Lite/Standard/Advanced/Publication+ workload plans. Trigger for:"non-tumor ML study", "bioinformatics paper outside oncology", "key genes and diagnostic model for a disease", "pyroptosis/ferroptosis/senescence/autophagy + disease", "GEO datasets + machine learning", "RF + LASSO diagnostic model", "DEG + feature selection + validation", "immune infiltration + biomarker", "non-cancer biomarker paper". Trigger even for casual phrasings like "I want to study X using machine learning", "help me design a non-tumor bioinformatics paper", or "how do I build a diagnostic model for disease Y".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
pcd-immune-oncology-research-plannerProtocol Design “Generates complete programmed-cell-death (PCD) / regulated-cell-death (RCD) bulk-transcriptome oncology research designs from a user-provided disease and mechanism theme. Always use this skill whenever a user wants to design, plan, or structure a cancer bioinformatics study built around cell-death patterns, tumor microenvironment, prognostic modeling, immune landscape analysis, mutation profiling, and computational drug sensitivity. Covers five study patterns (mechanism-gene-set, subtype-discovery, prognostic-signature, immune-response stratification, translational drug-hypothesis) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, and a strictly verified reference literature retrieval layer with real references only.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
primary-plan-recommenderProtocol Design “Compares multiple study-route options for the same biomedical research question and recommends one primary plan, while explicitly explaining why alternative routes are secondary, premature, weaker, or dependency-heavy. Always use this skill when the user already has a reasonably defined question but is unsure which main study route should anchor the project. Focus on plan comparison, route selection, dependency awareness, and primary-plan justification rather than full protocol drafting.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
process-related-diagnostic-biomarker-nomogram-research-plannerProtocol Design “Generates complete process-related diagnostic biomarker bioinformatics research designs from a user-provided disease context, gene-family or pathway theme, and validation direction. Use when a study centers on process-related genes, DEG and WGCNA integration, machine-learning feature selection, nomogram-based diagnostic modeling, immune infiltration, regulatory-network analysis, and optional external or experimental validation. Covers five study patterns (process-DEG discovery, co-expression-module integration, machine-learning biomarker selection, diagnostic model/nomogram workflow, immune-regulatory interpretation and validation) and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
prognostic-biomarker-protocol-designerProtocol Design “Designs discovery, modeling, and validation workflows for prognostic biomarkers in biomedical and clinical research. Always use this skill when the user needs a prognostic biomarker study blueprint rather than a diagnostic test protocol, predictive biomarker design, treatment recommendation, or a completed manuscript. Focus on endpoint family, follow-up horizon, time scale, candidate marker strategy, model-building logic, risk stratification framework, and internal/external validation requirements. Do not invent cohort size, event rate, assay readiness, literature support, or validation access.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
prospero-registration-helperProtocol Design “Assists researchers in generating PROSPERO registration content for meta-analyses from a title and optional protocol. Use when the user wants to draft a PROSPERO registration form.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
protocol-standardizationProtocol Design “Standardize fragmented experimental steps into reproducible protocol documents when you need method organization, lab SOP drafting, or cross-operator reproducibility; missing parameters must be explicitly marked as "To be supplemented/Not provided".” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
qtl-colocalization-study-plannerProtocol Design “Designs QTL colocalization studies that connect eQTL, pQTL, sQTL, or related molecular QTL signals with GWAS loci. Always use this skill whenever a user wants to plan, scope, or structure a locus-level study asking whether a GWAS association and a molecular QTL association may reflect the same underlying causal signal. Covers locus definition, QTL/GWAS source architecture, ancestry and LD alignment, single-locus vs multi-locus strategy, candidate-gene prioritization, optional fine-mapping, linked MR/SMR follow-up, and functional annotation. Always output four workload configurations (Lite / Standard / Advanced / Publication+) with a recommended primary plan, stepwise workflow, method rationale, evidence hierarchy, figure plan, minimal executable version, and strictly verified literature guidance with no fabricated references. Never equate colocalization with causality proof, mediation proof, or automatic target validation. Always include the mandatory Dataset Disclaimer immediately before any workflow section that mentions datasets, repositories, consortia, or public resources.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
randomization-genProtocol Design “Generates randomization sequences for RCTs including simple, blocked, and stratified allocation. Produces sealed randomization lists ready for allocation concealment.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
real-world-evidence-study-designerProtocol Design “Designs a structured real-world evidence study using EHR, claims, or registry data, with explicit handling of time zero, eligibility windows, exposure definitions, outcome windows, censoring, confounding control, and target-trial-emulation logic. Use this skill when the user needs study-type design and protocol framing for an observational clinical study based on routine-care data. Do not invent database fields, follow-up completeness, linkage, coding validity, or causal identifiability.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
research-grantsProtocol Design “Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan's NSTC when you need agency-compliant narratives, budgets, and review-criteria alignment for a specific solicitation/FOA/BAA.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
research-proposal-generatorProtocol Design “Generates a comprehensive research proposal design based on input literature, including hypothesis, mechanism verification, and budget. Use when the user wants to design a research project from a paper.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
sample-size-and-power-planning-assistantProtocol Design “Plans sample size estimation logic, power assumptions, feasibility checks, and fallback enrollment strategies for clinical and translational study protocols.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
sample-size-basicProtocol Design “Basic sample size estimator for clinical research planning. Computes per-group and total N for two-sample/paired t-tests, chi-square tests, and proportion comparisons, reporting alpha, power, effect size, and statistical assumptions summary for grant proposals and preliminary ...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
single-cell-research-plannerProtocol Design “Designs complete single-cell research plans from a user-provided biomedical direction. Always use this skill whenever a user wants to design, scope, or structure a single-cell study — including disease-focused, mechanism-focused, biomarker-focused, translational, perturbation-inspired, or validation-aware projects. It should define the research question, choose the best-fit study pattern, recommend sample grouping logic, suggest reference datasets as examples only, specify the core analysis modules, propose a validation ladder, and output four workload configurations (Lite / Standard / Advanced / Publication+). Never fabricate datasets, sample metadata, accession numbers, cohort availability, cell-type labels, external validation resources, or literature references. Always include the mandatory Dataset Disclaimer immediately before any workflow section that mentions datasets or public resources.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
single-compound-network-toxicology-disease-link-reference-groundedProtocol Design “Generates complete single-compound network-toxicology research designs from one exposure, one disease or toxic phenotype, and a validation direction. Use when a study centers on one compound–one disease link and needs target collection, overlap construction, enrichment, PPI hub prioritization, docking, optional transcriptomic cross-check, and conservative mechanistic synthesis. Covers five study patterns and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
single-drug-adverse-effect-hub-first-network-pharmacologyProtocol Design “Generates complete reference-grounded single-drug adverse-effect network-pharmacology research designs from a user-provided drug, adverse event, and desired evidence depth. Always use this skill when a user wants to design, plan, or upgrade a conventional network-pharmacology study centered on one fixed drug and one fixed adverse-effect endpoint, using drug-target prediction, adverse-event target collection, overlap analysis, PPI hub prioritization, enrichment interpretation, molecular docking, and optional orthogonal transcriptomic or literature validation. Covers five study patterns (canonical hub-first, cardiotoxicity or electrophysiology-oriented, immune-inflammatory adverse effect, organ-toxicity pathway context, translational validation) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with a recommended primary plan, dependency/evidence map, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, verified-reference pack, and self-critical risk review.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
single-drug-adverse-effect-pathway-anchored-network-pharmacologyProtocol Design “Generates complete reference-grounded single-drug adverse-effect network-pharmacology research designs from a user-provided drug, adverse event, and desired evidence depth. Always use this skill when a user wants to design, plan, or upgrade a conventional network-pharmacology study centered on one fixed drug and one fixed adverse-effect endpoint, using drug-target prediction, adverse-event target collection, overlap analysis, PPI hub prioritization, enrichment interpretation, molecular docking, and optional orthogonal transcriptomic or literature validation. Covers five study patterns (canonical hub-first, cardiotoxicity or electrophysiology-oriented, immune-inflammatory adverse effect, organ-toxicity pathway context, translational validation) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with a recommended primary plan, dependency/evidence map, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, verified-reference pack, and self-critical risk review.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
single-drug-faers-safety-profile-research-plannerProtocol Design “Generates complete FAERS pharmacovigilance study designs for one-drug whole-profile safety mapping using signal detection, subgroup analysis, onset/seriousness characterization, and conservative label-gap interpretation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
single-gene-oncology-reference-grounded-research-plannerProtocol Design “Generates complete conventional single-gene oncology research designs from a user-provided cancer context, target gene, and validation direction. Use when a study centers on a fixed candidate gene and needs expression, prognosis, clinicopathologic association, functional interpretation, immune context, genomic or epigenetic context, optional drug-response hypotheses, and orthogonal validation. Covers five study patterns and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
sop-writerProtocol Design “Write GCP-compliant standard operating procedures for laboratory, clinical, or research workflows; use when a reproducible SOP with roles, steps, and control points is required.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
study-objective-refinerProtocol Design “Refines broad, vague, or aspirational biomedical research objectives into clear, bounded, measurable, executable, and downstream-ready study objective statements. Always use this skill when a user has a general aim such as “explore a mechanism,” “study prognosis,” “investigate biomarkers,” or “look at treatment response,” but the objective is still too broad, non-operational, or too ambiguous to support protocol framing, design selection, analysis planning, or hypothesis design. Never assume that polished wording alone means the objective is actionable. Focus first on objective type, missing operational elements, scope discipline, and downstream-ready formulation.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
tooluniverse-clinical-trial-designProtocol Design “Strategic clinical trial design feasibility assessment using ToolUniverse. Evaluates patient population sizing, biomarker prevalence, endpoint selection, comparator analysis, safety monitoring, and regulatory pathways. Creates comprehensive feasibility reports with evidence gr...” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
translational-study-blueprintProtocol Design “Designs a translational blueprint for moving a biomedical finding toward diagnosis, prognosis, treatment response prediction, patient stratification, or therapeutic development, with explicit translational milestones, validation thresholds, and feasibility-sensitive route framing.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
treatment-response-predictor-plannerProtocol Design “Designs studies for predicting treatment response or resistance in biomedical and clinical research. Always use this skill when the user needs a treatment-response or resistance prediction study blueprint rather than a prognostic biomarker protocol, diagnostic test design, causal treatment-effect estimation, or a completed manuscript. Focus on responder definition, treatment context, baseline comparability, feature integration strategy, model development logic, validation architecture, and interpretation boundaries. Do not invent response rates, cohort size, assay readiness, regimen uniformity, literature support, or validation access.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
tumor-immune-infiltration-diagnostic-ml-research-plannerProtocol Design “Generates complete tumor immune-infiltration-guided bulk-transcriptome diagnostic biomarker and machine-learning research designs from a user-provided cancer type and study direction. Always use this skill whenever a user wants to design, plan, or build a tumor bioinformatics study centered on differential expression, immune infiltration estimation, immune-linked module discovery, consensus feature selection, diagnostic modeling, nomogram construction, clinical association, and optional prognostic extension or validation. Covers five study patterns (immune-cell-first diagnostic workflow, immune-module-to-biomarker workflow, consensus-ML biomarker workflow, diagnostic-plus-prognostic hybrid workflow, translational validation workflow) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, reference literature pack, and self-critical risk review.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
two-sample-mr-exposure-screening-reference-groundedProtocol Design “Generates complete two-sample Mendelian randomization research designs from a user-provided outcome, exposure or exposure family, and robustness direction. Use when a study centers on summary-statistics causal inference with instrument selection, harmonization, IVW-primary estimation, complementary estimators, sensitivity analyses, optional multivariable upgrades, and conservative evidence interpretation. Covers five study patterns and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
two-sample-mr-research-plannerProtocol Design “Generates complete two-sample Mendelian randomization (MR) research designs from a user-provided research direction. Use when users want to design, plan, or build a study using two-sample MR to test causal relationships. Triggers:"design a two-sample MR study", "build a publishable MR paper", "test whether this biomarker causally affects this disease", "generate Lite/Standard/Advanced MR plans", "screen multiple exposures with MR", "bidirectional MR design", "causal inference using GWAS summary statistics", or "I want to study X and Y using MR". Always outputs four workload configurations (Lite / Standard / Advanced / Publication+) with a recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, and publication upgrade path.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
validation-strategy-designerProtocol Design “Designs internal, external, temporal, and functional validation strategies at the protocol stage for medical research studies.” No evaluations yet AIPOCH, Medical Research Skills·MIT·found on GitHubAIPOCH's own audit: Production Readysource
First-order coding in informants' termstheory How to code transcripts without imposing theoretical labels too early, and how to keep each concept tied to its passage. 1 example template, 4 example studies, 1 example specialist No evaluations yet Example skills·MIT·maintained by Ines Varga; Jun Sato
Building a Gioia data structuretheory From first-order concepts to second-order themes and aggregate dimensions, and how to draw the data structure figure. 2 example templates, 7 example studies, 1 example specialist No evaluations yet Example skills·MIT·maintained by Ines Varga; Jun Sato
Running thought trialstheory How to generate many heterogeneous conjectures about one problem before judging any of them. 1 example template, 3 example studies, 1 example specialist No evaluations yet Example skills·MIT·maintained by Ines Varga; Jun Sato
Declaring selection criteria for conjecturestheory How to write selection criteria before generating conjectures, and how to record why each conjecture was kept or dropped. 1 example template, 3 example studies, 1 example specialist No evaluations yet Example skills·MIT·maintained by Ines Varga; Jun Sato
No skill matches. The missing skill is a good first contribution. Contribute a skill
Projects that publish skills
e2er installs skills from each project's own source and records the source, licence and maintainers with every installed skill.
| Project | Maintainers | Licence | Skills |
|---|---|---|---|
| e2er bundled skills | e2er authors | MIT | 90 |
| Example skills(source not public) | Ines Varga; Jun Sato | MIT | 4 |
| Academic Research Skills (ARS) | Edward Cheng-I Wu | CC BY-NC 4.0 | 4 |
| Anthropic Skills (foundational) | Anthropic | MIT | 8 |
| ARIS skills | Yang, Ruofeng; Li, Yongcan; Li, Shuai | MIT | 80 |
| Auto-Empirical Research Skills (AERS) — first-party skills | Bryce Wang (Stanford REAP / CoPaper.AI) | CC BY-SA 4.0 (repo default); MIT for the mirrored first-party collections (StatsPAI, AER-skills, Paper-WorkFlow) | 22 |
| AutoResearchClaw skills | Aiming Lab | MIT | 9 |
| awesome-econ-ai-stuff (Antonio Mele) | Antonio Mele | Other (see repo) | 17 |
| Awesome Journal Skills (AJS) | Bryce Wang (Stanford REAP / CoPaper.AI) | MIT | 25 |
| claudeblattman (Chris Blattman) | Chris Blattman (University of Chicago, Harris School of Public Policy) | MIT | 23 |
| Clo-Author skills | Hugo Sant'Anna (UAB Economics) | none declared | 14 |
| Econ Research Skills (Hanlu Long) | Hanlu Long (hanlulong on GitHub; also maintains awesome-ai-for-economists) | PolyForm-Noncommercial-1.0.0 (econ-review); MIT (econ-slides, econ-write) | 4 |
| EvoSkills | EvoScientist team | Apache-2.0 | 14 |
| 100xOS shared skills(source not public) | Björn Hanneke | private (curator-owned) | 133 |
| Prose Revision (h/t Anthony Lee Zhang) | Gabberflast (GitHub) | MIT | 1 |
| Pedro Sant'Anna's Claude Code Workflow | Pedro H. C. Sant'Anna (Emory University, Economics) | MIT | 44 |
| Research Paper Writing Skills | Master-cai (GitHub) | MIT | 1 |
| Theorist Toolbox | Moran Koren (Ben-Gurion University of the Negev, Economics) | MIT | 11 |
| AIPOCH, Medical Research Skills | Found on GitHub, cited on each skill | MIT | 600 |
e2er skills listprojects, skill counts and licencese2er skills install <project>fetch from the project's own sourceThe skills commands are in e2er 0.10.0 and later. They do not install the skills found in AIPOCH, Medical Research Skills; each of those pages says how e2er can read one.